LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci14g2039	ATGGGCGTGAAGCACTTGTGGGATATACTTGAATCCTGCAAGAAAACAATTCCACTACACCATCTCCGGAACAAAAGGATATGCATAGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGCAAATCCATATCGTGTGTGAAGGAGAAAGTCTACCTCACGGGTCTCTTTCACCGCATCAGAGCGCTCATTGCTTTGAATTGCAGCCTAATTTTTGTCACAGATGGATCAATTCCTGCTATCAAGTTATCAACTTATAGGCAACGATTAAACTCTGGAAAAGATGTAGCACAAAATGAAAGCAACTTACAGAAAGTGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCGTGCATGATAAAAGAGGCTCACATCTTGGGGATGGCTCTTGGTATCCCATGTCTGAATGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCTGAATTATTGTGTGATGGATGTTTCAGTTCAGATTCAGATATCTTTCTTTTTGGTGCCAGGACAGTGTATAGGGATATTTGCCTTGGAGATGGTGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGGAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGGAGTGACTATAGTCAAGGAGTTTATGGTCTAGGTCCGGAGCTTGCTTGTCAGATAGTTAGGTCAATTGGCGACAAATGTGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAATGTCTGAAAACACTGAAAGGCGCAAAGAAGATGGGGCAAGTTTTCAAGAACAATAAAGAAAATATGTTGGACCATGATATGGCATTGAGTCATGGAGGCAAGAACAATTCACAAAGAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCGAAGTGCCACCCAGCAGATTCTGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGCAGTAAACTCCAACAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAATATATCCTTCCAAAAATAGCTGAAAGGGATTTACGGCGATTTGCCAATTTGCGCTTAACTTCATCACAAGTAGGAGTGAATCTTCCTTTGAATGAGATCCCTGTGAAGTGTCCTGTCTCGGAAATCATAAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTACGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCTGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTCTAGAATTTGAGGAGAAAAAGTGTTGGCTTAAGAAACAAAATATTCAGAAAAGAAGGCCAAAGAAATCAGAAACTGCATCTTCTATGATTGAACTTGACCTGAGACTCACGAATCTGTCACTGGATGTCAATCTGGTAGACCATGCCAGTCACAAGACATCTGATTCATCAGAGCAGGTATTTCATGATGCATCTGCCATGGAAGAAGCTGATCTGAATAGCAGAAATTTGTCGTATTCATCACATGATGAACAGATTGAATGGGATCAGAATGTGAGGGACACATATGGCAATCAGCAGCAGGGTGATTCCATGGCAAAATATGAGGTCATTGACTTACTGAGTCCTTCCCCACCTAAGCAGTCATGTGCTTCCTCCAGGTGCGCACAGTCTAATGGTGAACATATTGAAGTGATAAATTTGAGTGACTCAGATAGTGACACGTCACCTGAACATAAGAGGAAAGCCAAGGAGCTGAGATTGTTCTTAGCAGGAATTAGGGATGACCTCCATTGA	1794	0.4142	MGVKHLWDILESCKKTIPLHHLRNKRICIDLSCWIVQLQNVGKSISCVKEKVYLTGLFHRIRALIALNCSLIFVTDGSIPAIKLSTYRQRLNSGKDVAQNESNLQKVSSLPRNRGSEFSCMIKEAHILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYSQGVYGLGPELACQIVRSIGDKCVLQKFASEGIECLKTLKGAKKMGQVFKNNKENMLDHDMALSHGGKNNSQRDYNFLQVINAYVKPKCHPADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKIAERDLRRFANLRLTSSQVGVNLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKCWLKKQNIQKRRPKKSETASSMIELDLRLTNLSLDVNLVDHASHKTSDSSEQVFHDASAMEEADLNSRNLSYSSHDEQIEWDQNVRDTYGNQQQGDSMAKYEVIDLLSPSPPKQSCASSRCAQSNGEHIEVINLSDSDSDTSPEHKRKAKELRLFLAGIRDDLH	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci14g2039	597	SMART	HhH_4	202	235	IPR008918	GO:0003677\|GO:0003824
	Prci14g2039	597	SMART	xpgn3	1	97	IPR006085	GO:0004518
	Prci14g2039	597	Pfam	XPG N-terminal domain	1	91	IPR006085	GO:0004518
	Prci14g2039	597	Pfam	XPG I-region	133	215	IPR006086	GO:0004518
	Prci14g2039	597	SUPERFAMILY	Chromo domain-like	382	434	IPR016197	-
	Prci14g2039	597	Gene3D	-	201	267	-	-
	Prci14g2039	597	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	566	IPR006084	-
	Prci14g2039	597	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	200	361	IPR036279	-
	Prci14g2039	597	SMART	xpgineu	130	200	IPR006086	GO:0004518
	Prci14g2039	597	FunFam	Flap endonuclease GEN-like 1	200	257	-	-
	Prci14g2039	597	SUPERFAMILY	PIN domain-like	3	215	IPR029060	-
	Prci14g2039	597	CDD	PIN_GEN1	2	198	-	-
	Prci14g2039	597	Gene3D	-	2	199	-	-
	Prci14g2039	597	CDD	H3TH_XPG-like	203	246	-	-
	Prci14g2039	597	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	24	38	IPR006084	-
	Prci14g2039	597	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	150	170	IPR006084	-
	Prci14g2039	597	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	71	90	IPR006084	-
	Prci14g2039	597	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	129	146	IPR006084	-
	Prci14g2039	597	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	205	220	IPR006084	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci14g2039	Prci-Chr14	27756080	27764065	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci14g2039	1	236	Core DNA Replication Machinery Family	AT5G26680	26.357	2.62e-12	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci14g2039	K15338		-	qsa:O6P43_008236	840.106