Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g2022 ATGCCTTCTATGGCTCCCTCTAAGAGTCCTAAAGAGAAGGAGAAGAAGATGAAGAACACGATTTTAACTGAGGAAGCATCCATTGGTATGGAGAGCACAAAAAGTTCTAAGCTTACAAGAAATACCAAGGTGTCTGATTCTGACCAAGACGGGTTTTCGGACAAGAAAGCGAAGAAGAAGGAGACCAAAAAGCGTAAATCTTCGGATATTGATGGGGTTGGAGAGAAGAGCGAGAGTAGCTCGGAGTTAGTTGAGCCCGAAAGTTCGAGGGCGAAGAGTCAGGAGAAGAGAAAGAAGAATAAAAAGCCGAAATTCGAGGAACCTGACATGGGAGAGGAAGAGGTTGAGAAGAAGGATCCCAATGCAATTTCGAACTTTCGGATATCGGAGCCCTTGAGGGCCAAGTTGAAGGAGAAAGGGATTGAATCTCTGTTTCCCATTCAGGCAATGACTTTCGATACCATCCTCGATGGATGTGATTTGGTCGGTCGGGCTCGCACTGGTCAGGGTAAGACTTTGGCTTTTGTGTTGCCCATGTTAGAGTCTTTAGCCAATGGTTCAGCGAAAACAGCCAGAAAGATTGGATATGGGAGGTCTCCAAGCGTTCTTGTGCTCTTACCTACTAGGGAATTGGCCTCTCAGGTGTTCTCTGATTTTGAAATTTATGGTGAGGCATTGGGTTTGATTTCTTGCTGTTTGTATGGTGGAGCTCCATATCAAGCTCAAGAAATTAAGCTCAAGCGAGGTGTTGATATTGTTATTGGAACACCAGGCCGCATAAAGGATCATATAGAGAGACAAAATATTGACCTAACCCAACTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTCATTTTGGGTAAGGTTAAAGATGTTAGTAAAGTTCAGACACTTCTATTCAGTGCTACTTTGCCAGACTGGGTCAAGCATATTTCCTCAAAGTTTTTGAAATCAGATAAGAAAAATGTTGACCTTGTTGGGAATGAGAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTACAAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGCTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCAGCTTCTGAGCTTGCAGGGCTTTTGCCTGGAGCTCGAGCTCTACATGGTGACATACAGCAAGCGCAACGTGAGGTCACATTGTCTGGCTTTAGGTCTGGGAAATTCATGACATTAGTGGCCACAAATGTGGCAGCTCGGGGTTTAGATATTAATGACGTTCAGTTAATTATTCAGTGTGAACCTCCGCGTGATGTAGAAGCCTATATTCATCGTTCTGGCCTCACAGGACGAGCAGCCAATACTGGGGTTGCTGTTATGCTTTATGATCCAAGAAGGTCAAATATATCTAAAATTGAAAGAGAATCAGGTGTGAAATTTGAACACATATCTGCTCCTCAGCCTGCTGATATTGCAAAAGCTGTTGGTGGGGATGCTGTTGAAATGATAAACCAAGTATCCGACAGCGTGATTCCTGCATTCAAAGCTGCTGCTGAGGAGCTTGTGAACAACTCTGGTTTAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAATTATGTCACGTTACTTCTTGAGATTGGAAGACCCATCTTCACCCCATCGAGATTTCTTCCCGAGGAGAAAGTTGAGGCAGTGAAGGGCCTTACTCTGACTGCAGATGGAAATGGCTCTGTTTTTGATGTGCCAGCTGAAGATTTAGATACATATCTTGCTGGTCAGGAAAATGCTGCTAATATAAGCTTAGAAGTATTACAAGAATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGTAGATTTGGTGGCGGTGGTCGTGGTGGGTTTGGTAATAATAGAAGTAGTGGCGGTGGAAACAGGTTTTCTGGTGGAAGAGGAGGCGGCAGGAACGGTGGTTTCTCAAATCAGAGGAGTGATCAGTTTTTCGGCGGTTCTAATGGCGGGAGAGGCCGTGGTGGCAATAGAGGGGGAAACAGATGGTAG 2139 0.4446 MPSMAPSKSPKEKEKKMKNTILTEEASIGMESTKSSKLTRNTKVSDSDQDGFSDKKAKKKETKKRKSSDIDGVGEKSESSSELVEPESSRAKSQEKRKKNKKPKFEEPDMGEEEVEKKDPNAISNFRISEPLRAKLKEKGIESLFPIQAMTFDTILDGCDLVGRARTGQGKTLAFVLPMLESLANGSAKTARKIGYGRSPSVLVLLPTRELASQVFSDFEIYGEALGLISCCLYGGAPYQAQEIKLKRGVDIVIGTPGRIKDHIERQNIDLTQLRFRVLDEADEMLRMGFVEDVELILGKVKDVSKVQTLLFSATLPDWVKHISSKFLKSDKKNVDLVGNEKMKASTNVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQAQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGLTGRAANTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGDAVEMINQVSDSVIPAFKAAAEELVNNSGLTAVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIFTPSRFLPEEKVEAVKGLTLTADGNGSVFDVPAEDLDTYLAGQENAANISLEVLQELPRLQERDQSRGGRFGGGGRGGFGNNRSSGGGNRFSGGRGGGRNGGFSNQRSDQFFGGSNGGRGRGGNRGGNRW 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g2022 712 MobiDBLite consensus disorder prediction 681 695 - -
Prci14g2022 712 Pfam GUCT (NUC152) domain 555 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Prci14g2022 712 Pfam DEAD/DEAH box helicase 145 322 IPR011545 GO:0003676|GO:0005524
Prci14g2022 712 SUPERFAMILY RNA-binding domain, RBD 559 635 IPR035979 GO:0003676
Prci14g2022 712 MobiDBLite consensus disorder prediction 41 57 - -
Prci14g2022 712 MobiDBLite consensus disorder prediction 1 118 - -
Prci14g2022 712 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 334 IPR014001 -
Prci14g2022 712 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 363 505 IPR001650 -
Prci14g2022 712 SMART ultradead3 140 352 IPR014001 -
Prci14g2022 712 SMART helicmild6 389 466 IPR001650 -
Prci14g2022 712 MobiDBLite consensus disorder prediction 642 712 - -
Prci14g2022 712 Gene3D - 574 638 - -
Prci14g2022 712 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Prci14g2022 712 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 48 535 - -
Prci14g2022 712 MobiDBLite consensus disorder prediction 25 40 - -
Prci14g2022 712 MobiDBLite consensus disorder prediction 64 118 - -
Prci14g2022 712 CDD DEADc 132 329 - -
Prci14g2022 712 Gene3D - 344 573 IPR027417 -
Prci14g2022 712 CDD SF2_C_DEAD 349 475 - -
Prci14g2022 712 CDD GUCT_RH7_like 562 640 - -
Prci14g2022 712 Pfam Helicase conserved C-terminal domain 368 465 IPR001650 -
Prci14g2022 712 Gene3D - 68 336 IPR027417 -
Prci14g2022 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 478 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g2022 Prci-Chr14 27649800 27655505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g2022 158 505 Eukaryotic Initiation Factors Gene Family AT1G72730 30.028 2.54e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g2022 K16911 - qsa:O6P43_005503 946.036