Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1936 ATGGTGTTAGGATGGGGAAGAAGAAGCAACAAGACCAGAAAGCCCAAACTGGATCTTGTTATTCCAAACCATTTCATCTGTCCTGTTTCTCTTGATTTGATTAAAGACCCCGTCACGTTATCAACTGGAATTACCTATGATCGTGAAAGCATCGAACGCTGGTTCGAGCAAGGGAATTTCACGTGCCCTGTCACCAATCAGATTCTCTCCAGCTTTGATCTCGTTCCTAATCACTCGCTTAGGGTTATGATTCAGGATTGGTGCGTTGAGAATCGACGATTTGGGATCGAGAGAATTCCGACTCCCAGAATACCTGTTACTCCAATCCAAGTCGAAGAGATTCTTTTTCAACTCGTGGCCTCGGCGTCGCGTTTGGATCGTTATGGTTTTCTGCAAGGCGTAGATAGAATCAAGGAATGGGGTTCCGAGAGCGAGAGAAACAGGAGGTGTATTGTGGACAATGGTACTCCTAGTGTATTGGCCTCTGCATTTCGTGAATTTGCGAATGATTCTATTGAGGAAAATGTAAGTGTGCTAGAGGAGATTTTGAATGCCCTAAATTGGATGCTTCCACTTCAACTCGAAGCCCAGAAAATTTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTCGGACACCAAGATCTTTCCGGAAAACAGAACGCCATTGTTGCTTTGAGACAGATCCTTTCCTCTGGTGATAAACACACTTTTGAGACTATGGCAGAAATTGAAGGGACCATTGAGCCATTGGTGGAGTTCATTAACAAAAGAATTAACCCAACAATCACAAAAGCTTCACTAGGGATTGTTTATTACTTGGTTTCATCTTCTTACCCATCAAGTGAGAAGGTGAAGCTTGAATTTATTGAGCTGGGTTTGATCTCTTCACTTCTAGAGATCCTAATTGACGCAGACAAGAGCCTATCTGAGAAGGCTTTAGGTGTTTTTGACTCACTCTGTGACTGTCAAAAAGGAAGAGAAAAGGCCTTCAGTAATGCTCTTACAGTTCCTGTACTGGTGAAGAAGATTTTGAGGATTTCAGCTTTGGCAACAAATTACTGTGTGTCTGCTATGTGGAAGTTGTGCAGATATGGATCTAAAGACGATGATGAAGATGAAGTAGAAGAAGCTCTGATTGAAGCACTTCAAGTTGGTGCATTTCAGAAGCTGTTGGTGGTGTTGCAGGTTGGTTGTGGTGATGAGACAAAGGAGAAAGCAACAGAGCTTCTGAAATTGTTCAATCCTTATAGGGCTGGTTTGGAATGCATAGACTCAGATTTCAAGAACCTGAAGAGATCATTTTGA 1314 0.4262 MVLGWGRRSNKTRKPKLDLVIPNHFICPVSLDLIKDPVTLSTGITYDRESIERWFEQGNFTCPVTNQILSSFDLVPNHSLRVMIQDWCVENRRFGIERIPTPRIPVTPIQVEEILFQLVASASRLDRYGFLQGVDRIKEWGSESERNRRCIVDNGTPSVLASAFREFANDSIEENVSVLEEILNALNWMLPLQLEAQKILQSSDALRCLVWFFGHQDLSGKQNAIVALRQILSSGDKHTFETMAEIEGTIEPLVEFINKRINPTITKASLGIVYYLVSSSYPSSEKVKLEFIELGLISSLLEILIDADKSLSEKALGVFDSLCDCQKGREKAFSNALTVPVLVKKILRISALATNYCVSAMWKLCRYGSKDDDEDEVEEALIEALQVGAFQKLLVVLQVGCGDETKEKATELLKLFNPYRAGLECIDSDFKNLKRSF 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1936 437 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Prci14g1936 437 SUPERFAMILY ARM repeat 173 380 IPR016024 -
Prci14g1936 437 CDD RING-Ubox_PUB 22 74 IPR045210 -
Prci14g1936 437 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Prci14g1936 437 PANTHER WDSAM1 PROTEIN 20 417 IPR045185 GO:0061630
Prci14g1936 437 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Prci14g1936 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 96 IPR013083 -
Prci14g1936 437 SUPERFAMILY RING/U-box 20 97 - -
Prci14g1936 437 Gene3D - 115 415 IPR011989 -
Prci14g1936 437 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1936 Prci-Chr14 26927012 26928987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1936 5 437 U-box Gene Family AT5G37490 42.152 3.22e-110 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1936 - - gmx:100794340 566.614