Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1927 ATGTTAGCGAATAACTCTCTCGCTTCGGCTCCTACTTCTGATCCCTTTCCTTGTGGCGACAATGGTACGATCACCACGAATAAGAGAAAGAGAAGGCCCGCCGGAACTCCAGATCCGGACGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTGCTGGAATCGGACCGGTACGTGTGCGAGATCTGCAATCAGGGCTTTCAGAGGGACCAGAACCTGCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTTCTGAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTGTGCCCGGAGCCGACGTGCTTGCACCATGACCCGTGCCATGCGCTCGGCGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGCAACCACAAGCAATGGGTCTGCGAACGATGCTCCAAAGGCTACGCAGTGCAGTCCGATTACAAAGCTCATCTCAAAACCTGTGGCACCAGAGGCCACTCTTGCGATTGTGGTCGCGTTTTCTCAAGGGTGGAGAGCTTTATCGAACACCAAGACAATTGTAACATGGGGCGGCTCCGGTCGGAAACACAGCCACCGCTGCAGCAGCAGCCGCCGGCGTGCTTGTCGCGAACCGCTTCGAGTCCGAGTCCGTCAAGTGAAACCAATTTCAGCACTGGGCTGCAGAACTGGAACGGACTTGTGTTGCCTAAGCCAATCACTGAACCGGCCACATTGTTGAACCCTACCATTAACACTGTTGCTCATCGTGAAACCTCATTATCGAACAACAAGTATAATAAAGTCTGTCCAAACTTGGATCTTCGGCTCTCTACCTCTAGTTCAATTATTCCCATTGATACAGAATCGCCTAAGAGAGATGATCATCATGAGACCCGTTCGAACCACTTTCGGATCTCAATCGGCGAGGAAAATGAATCCAACTGCTTCAATACTCGGAGGAATTCACCCAAGGAGAGTTGTAACAGCAGCGATAAACCAGAAGGTAATAATGGAGGGATGATTAGGGTGATTCATCAAGAGGAAGCACGTGAGCAGCTAAGGTTAGCCACGGCGGAGAAGGCTTACGCAGAGGAAGCAAGGAAGCAAGCAAGACGACAGATAGAAGTTGCTGAGAAGGAATTTGCAAACGCAAAGAGAATCAGGCAAGAGGCACAAGCCGAGCTTGACAAAGCCTACGCCATCAAAGAACACGCCATCAAGCAGATCAACTCCGTCATGCTTCAAATCACCTGTCATGCTTGCAAACGACAGTTCGGAGCCCAAACGACGTCGACAATACTGCCGACAGCCTCGGCGGTTCCTCCTCCACGGGACGAGAACTCCTTGGTAGTAAGCTACATGTCGTCTGCTCTAACAACAGAAGGTGGCGAAGAAGAGAACTACAACAATAACAATAATAATAACGAGAAAAAAGAAGGGAAAAACAGAAAATCTTTATCATTGGTCTAG 1455 0.5113 MLANNSLASAPTSDPFPCGDNGTITTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDNCNMGRLRSETQPPLQQQPPACLSRTASSPSPSSETNFSTGLQNWNGLVLPKPITEPATLLNPTINTVAHRETSLSNNKYNKVCPNLDLRLSTSSSIIPIDTESPKRDDHHETRSNHFRISIGEENESNCFNTRRNSPKESCNSSDKPEGNNGGMIRVIHQEEAREQLRLATAEKAYAEEARKQARRQIEVAEKEFANAKRIRQEAQAELDKAYAIKEHAIKQINSVMLQITCHACKRQFGAQTTSTILPTASAVPPPRDENSLVVSYMSSALTTEGGEEENYNNNNNNNEKKEGKNRKSLSLV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1927 484 Gene3D Classic Zinc Finger 119 195 - -
Prci14g1927 484 FunFam protein indeterminate-domain 12-like 36 104 - -
Prci14g1927 484 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Prci14g1927 484 MobiDBLite consensus disorder prediction 1 44 - -
Prci14g1927 484 Gene3D Classic Zinc Finger 35 99 - -
Prci14g1927 484 MobiDBLite consensus disorder prediction 186 220 - -
Prci14g1927 484 MobiDBLite consensus disorder prediction 1 24 - -
Prci14g1927 484 MobiDBLite consensus disorder prediction 309 333 - -
Prci14g1927 484 Coils Coil 341 403 - -
Prci14g1927 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Prci14g1927 484 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 462 IPR031140 -
Prci14g1927 484 MobiDBLite consensus disorder prediction 455 470 - -
Prci14g1927 484 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Prci14g1927 484 MobiDBLite consensus disorder prediction 309 330 - -
Prci14g1927 484 MobiDBLite consensus disorder prediction 455 484 - -
Prci14g1927 484 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Prci14g1927 484 SMART c2h2final6 134 161 IPR013087 -
Prci14g1927 484 SMART c2h2final6 98 128 IPR013087 -
Prci14g1927 484 SMART c2h2final6 57 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1927 Prci-Chr14 26828477 26832098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1927 4 457 C2H2 Transcription Factor Family AT1G25250 52.174 3.20e-139 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci14g1927 zf-C2H2 0.0046 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1927 K25871 - gmx:100785333 604.364