Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1717 ATGATGAAGAGCCATACCCAGTTTCCATTGGGCCTCGCGCTTTTCAGCGTTCTCTGCCTCGTCCAAACCAAATCCATCATCGAACCATGCGTCTCCTCAGACTCCTGCTTTTCCCTCCTCTCCTTCGTCCTACCCTGGGACTCCAAGCTATCCGAAATCGCCTCGCGCTTTCAGGTCAATGTCTCCAACATCCTCGCCGCCAACTCCGTCTTCCCGATGTCACAGAAACTCGCCGATCAGATCATCAGATCCAAATCCATCGTGAAGATCCCCATCTCGTGCCCTTGTGTCGACGGAATCCGGAGATCTATGTCCACAATCTACAACGTGCAGGCATCGGACACACTGGAGAACATATCGGAGGGAATCGGCCGGCTGGTGAGCGCGGACCAGATAGCGAGCGTGAACAGCATCAATGCGACGAATCGTTTGACGAACGGAGGGAAGTTGGTGATTCCGTTGCCGTGCACGTGCTTCAATAACGTGAGGAATGGCGAAACGACGGTGTATATGTCGTATGCGGTGAGCGAGGGGGAGAGCTTGAGGAGTATAGCGTCGGGTTCGAAAACGACAGTGTCGGATTTGGAGGCAATCAATGGACTGAGTCAGGACGCGGTCGAACCGGGAGATATAATAGCTATTCCCATTGCAGCTTGTTCATCAGCAAGCCTGAATTGGTACAACGAGAGTCTCATCGTCCCAAATGGCTCATATGCTCTTACTGCCACAGACTGCATCAAATGCTCTTGTGGCCCCATCGATCTCAGGCTGCAATGTTATCCATCTGGTCTGGAAGCTCCCTGCTTCAATTTACAGTGCAAAGATTCCAATCTTGTAATTGGAGACCAACATGTCACTTATTTCAAATCTGGCTGCAATGTCACCCAGTGTGTCTATCGTGGCCACAGAGGTGGTAAGATTCTAAGAAGCGTGTCGGAATCTTCTTATCTGAGGTGCCCCGCGAATCAGACTTACAATGCAGCGTCGCCTTGGCCATCAATAAATTTAGATCCCGTAATGCCGTTTGGGGCATTTTCCCCATCTCCGTCACCTAGTCCAGTTTCTGATGCTTTAGTGCACGCCACTCAAGTTTCCATCATGTTGCTCCCACTGCTTCTTTGGATATTAATCAACACGTGA 1140 0.507 MMKSHTQFPLGLALFSVLCLVQTKSIIEPCVSSDSCFSLLSFVLPWDSKLSEIASRFQVNVSNILAANSVFPMSQKLADQIIRSKSIVKIPISCPCVDGIRRSMSTIYNVQASDTLENISEGIGRLVSADQIASVNSINATNRLTNGGKLVIPLPCTCFNNVRNGETTVYMSYAVSEGESLRSIASGSKTTVSDLEAINGLSQDAVEPGDIIAIPIAACSSASLNWYNESLIVPNGSYALTATDCIKCSCGPIDLRLQCYPSGLEAPCFNLQCKDSNLVIGDQHVTYFKSGCNVTQCVYRGHRGGKILRSVSESSYLRCPANQTYNAASPWPSINLDPVMPFGAFSPSPSPSPVSDALVHATQVSIMLLPLLLWILINT 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1717 379 SMART LysM_2 50 91 IPR018392 -
Prci14g1717 379 SMART LysM_2 107 153 IPR018392 -
Prci14g1717 379 SMART LysM_2 172 215 IPR018392 -
Prci14g1717 379 Gene3D LysM domain 102 161 IPR036779 -
Prci14g1717 379 CDD LysM 172 214 IPR018392 -
Prci14g1717 379 ProSiteProfiles LysM domain profile. 106 152 IPR018392 -
Prci14g1717 379 SUPERFAMILY LysM domain 171 215 IPR036779 -
Prci14g1717 379 Gene3D LysM domain 162 225 IPR036779 -
Prci14g1717 379 Pfam LysM domain 173 215 IPR018392 -
Prci14g1717 379 Pfam LysM domain 50 91 IPR018392 -
Prci14g1717 379 Pfam LysM domain 108 153 IPR018392 -
Prci14g1717 379 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 5 323 - -
Prci14g1717 379 ProSiteProfiles LysM domain profile. 171 214 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1717 Prci-Chr14 24448685 24452547 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1717 12 351 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 43.149 1.55e-81 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1717 - - aprc:113855794 435.647