Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1710 ATGCCGGTGAATCTAACGCCCAACGCGATCGCGGCGATTGTCGCCGGCGACGTGAACTCGAAGCCGCTTGTCCAGGTCCTGGACATCAAGTTGATTTCTAATAATACGCAGCAGGAGAGGTACCGGCTTCTGATTTCCGATTCCGCTTCCACTCAGCACGCTATGCTCGCGACTCAGCTCAACGACCGAGTTAGAACCGGACGAGTTAAGAAAGGTTCCGTTGTTCAGCTGATTGACTATGTTTGCAGTCAAATTCAGAACCGCAAGATCATTGTAGTGCTCAACATGGAAACTATAATTCCAGATTGTGAGATTATCGGGAATTTAAACTCATTTGTGGAATCTGATTCAATAGCTCATAAAGCATTGTCTAGTAACAATATGCAGAACCCATCCAGGTTTAATAACAATAGTCTGTCTGCTCAAAATTCTAGTCATGATGGGCAGAATTTCAGGCCAACTGTTCAACCTCCATTCCAACCACCACCAGTTTACAAAAATCAAGGTGCAATTATGAAGAATGAAGCACCTGCACGAATAATTCCTATTGCTGCTTTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGAGGAGATGGAAAAGTTTTCTCTTTTGATCTCCTTGACTCTGATGGAGGTGAAATACGAGTAACTTGCTTCAATGCTATTGTTGATCGATTTTATGATGCAATTGAGGTTGGTAAAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCGCAGAAGAACTTCAATCATTTGAAGAATGACTGGGAAATTTTTCTAGACTCTATTTCAACTGTGGAGCTTTGCCCAGATGAAGATGCTTCAATACCCAGACAACAGTTCTCCTTTAGGCCTATCAGTGACATTCAGAATGTTGACAGTAACTGCATACTTGATGTTATTGCGGTTGTGACATCAGTAAATCCCTCGGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGACGAATTCTGAATGTAAAAGACATGTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTCCAAGAGATGGTTGATGGTGGTTTTTTCCCGGTTCTGGCAGTCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACAATTTCTTCCACCCAACTGTTCATTAATCCAGATTTTCCTGAGGCTCATAGATTAAGAGACTGGTTTGACCAAGGGGGGAAAGATTCAGCTTCTTTGTCCATTTCTAAGGACATTTCACCTGGAGGACTTAAGAACGAGATACGTAAAACTGTGTCTCAGATCAAGGATGAAGGCCTTGGCCGATCAGATAAGCCAGACTGGATAACGGTGAGGGCAACCATCTCTTACATCAAGGCAGATACATTCTGTTACACGGCTTGCCCACTGATGATTGGAGACCGACAGTGCAGCAAAAAAGTGACTAGGTCCGGAGCCACTAGGTGGAAATGCGATAGATGCAATCAAGAGTTTGAGGAGTGTGATTACCGCTACCTTCTTCAAGCCCAAATTATGGATCATACGGGAATAACTTGGGTCACAGCATTCCAAGAATCAGGCGAGGAAATCTTGGGTTGCTCAGCGAAGGAGCTGTACTTATTGAAGTATGAAGAGCAGGATGATGAGAAGTTTGAACGCATAATCCGTAGTAAACTCTACAACCAGTTTGTGTTTCGGCTGAAAGTGAAGGAGGAATTGTATGGTGATGAACAGAGGGTTAAGATTACCGTGGTTAAGGCAGATAAGGTGGATTATTCTTCAGAGAGTAGATACATGTTAGATTTGATTTCAAAATTTTGTAAGCAGTAA 1881 0.4296 MPVNLTPNAIAAIVAGDVNSKPLVQVLDIKLISNNTQQERYRLLISDSASTQHAMLATQLNDRVRTGRVKKGSVVQLIDYVCSQIQNRKIIVVLNMETIIPDCEIIGNLNSFVESDSIAHKALSSNNMQNPSRFNNNSLSAQNSSHDGQNFRPTVQPPFQPPPVYKNQGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDAIEVGKVYLISKGSLKPAQKNFNHLKNDWEIFLDSISTVELCPDEDASIPRQQFSFRPISDIQNVDSNCILDVIAVVTSVNPSVPILRKNGMETQRRILNVKDMSGRSVELTLWGDFCNREGQKLQEMVDGGFFPVLAVKSGRVNDFSGKSIGTISSTQLFINPDFPEAHRLRDWFDQGGKDSASLSISKDISPGGLKNEIRKTVSQIKDEGLGRSDKPDWITVRATISYIKADTFCYTACPLMIGDRQCSKKVTRSGATRWKCDRCNQEFEECDYRYLLQAQIMDHTGITWVTAFQESGEEILGCSAKELYLLKYEEQDDEKFERIIRSKLYNQFVFRLKVKEELYGDEQRVKITVVKADKVDYSSESRYMLDLISKFCKQ 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1710 626 FunFam Replication protein A subunit 431 623 - -
Prci14g1710 626 Pfam Replication factor-A protein 1, N-terminal domain 5 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Prci14g1710 626 Pfam Replication protein A OB domain 303 407 IPR031657 -
Prci14g1710 626 FunFam Replication protein A subunit 4 112 - -
Prci14g1710 626 Pfam OB-fold nucleic acid binding domain 194 280 IPR004365 GO:0003676
Prci14g1710 626 CDD RPA1_DBD_C 449 622 IPR047192 -
Prci14g1710 626 Gene3D - 292 431 IPR012340 -
Prci14g1710 626 Gene3D - 432 624 IPR012340 -
Prci14g1710 626 CDD RPA1_DBD_B 314 421 - -
Prci14g1710 626 Pfam Replication factor-A C terminal domain 465 615 IPR013955 -
Prci14g1710 626 Gene3D - 179 289 IPR012340 -
Prci14g1710 626 CDD RPA1N 9 100 IPR007199 GO:0003677|GO:0005634|GO:0006260
Prci14g1710 626 FunFam Replication protein A subunit 292 430 - -
Prci14g1710 626 SUPERFAMILY Nucleic acid-binding proteins 297 425 IPR012340 -
Prci14g1710 626 CDD RPA1_DBD_A 182 285 - -
Prci14g1710 626 Gene3D - 3 112 IPR012340 -
Prci14g1710 626 FunFam Replication protein A subunit 179 288 - -
Prci14g1710 626 SUPERFAMILY Nucleic acid-binding proteins 1 108 IPR012340 -
Prci14g1710 626 MobiDBLite consensus disorder prediction 125 150 - -
Prci14g1710 626 NCBIfam replication factor-a protein 1 (rpa1) 4 622 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci14g1710 626 PANTHER REPLICATION FACTOR A 1, RFA1 193 599 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Prci14g1710 626 SUPERFAMILY Nucleic acid-binding proteins 446 623 IPR012340 -
Prci14g1710 626 SUPERFAMILY Nucleic acid-binding proteins 179 293 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1710 Prci-Chr14 24407470 24410437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1710 26 622 Core DNA Replication Machinery Family AT2G06510 70.732 0.0 920
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1710 K07466 - zju:107409151 1028.08