Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1677 ATGATGGATGTTGCAGAGGTTGAAGAAAATATGTTTGCAGCAAGTGATGCCAAGTTACATGGAGAATTGTGCAAGTCTCTTTCGGCAACATATTGCAAATTATTGTCAATATTTCCAACTTTGGAAGAAGCTAGGCCCAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAACATTGCTCGGAGTGTAGCAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAAAATAGTCTTAAACGGGTGGAAGATATCGTTCCACAATCTATTGGATGTCAGATTCAAGAGATTGTGAGTGAACTTGAAAGCATGGAATTGGCACTTGACCCAATGGAGAAGCAAGTTGGTGATAATTTAATTGCTTTGCTCCAGCAGGGGAGAAAGTTTAACGACTCTACTGATAATAGTGAGCTTGAATGTTTTCACCAAGCTGCTATTAGATTAGGAATCACATCTTCTAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAGCATATTGAAAGAGCTCGGGCTGAGGATGACAAGCGGAAGGAATCAATTGTTGCATATCTTCTACACCTCATGAGGAAATACTCTAAGTTATTTAGAAGCGAGTTTTCAGACGATAATGATTCTCAGGGTTCCACTCCTTGTTCTCCCACTGTTATGGGCTCTATGGAGGATAGTGTTGCTTGTAGTCATTACCAGGCTTTTGACCGACAGCTCTCAAAACTTAGTTCTTTTAATTTTAAGCCACATAATAGAAAATCATGGCAAATGGCCCTTACACCAGAGGAGTTAAGGTGTCCAATATCCCTGCAACTTATGTATGATCCTGTCATAATTGCTTCTGGGCAAACTTATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGGCACAACACCTGCCCGAAGACTCAACAGAAACTTGCACATCTATCATTGACTCCAAATTACTGTGCCAAGGGTCTGGTTGCTAGTTGGTGTGAACAAAATGGAGTGCCCATTCCTGATGGCCCTCCCGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTGAGTCTGAATCAACCAATTCGAGGTCTGTTAACAGTGTCAACTCTTGCAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACTGGGGTCTCGCATGAGACTGGAGAAAATGGATCTGAAAGTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGATGGGAACAGCTGGAAAGGGAAATGCAAAGTGGTCGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCGAATGGGTTTGTTGAAGCACTACTGCAGTTTCTGCAATCAGCAGTGTCCGAAGGGAATGTGACAGCTCAAGAAAGTGGAGCAATGGCTCTTTTTAACCTTGCTGTGAATAACAACAGAAATAAGGAGATTATGTTAGCAGGAGGAGTATTATCGTTGCTAGAGGAAATGATCGCTAATTCCAACTCTTATGGCTCTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTACGATTGGCACGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTCTGTCAACCTGACATTGAAGTCCAGTGCAAGCAAGATTCCCTTCATGCGCTGTATAATCTATCCACTGTTCCCTCCAACATTCCAAACCTCATTTCATCTGGCATCATTAGTGGCCTTCAATCCCTCGTTGCAGGCCAGGGTGATTGGATGGGGACAGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCAGTTGGGAAGGGAGGAAATGATATCATTTCCAGGACTCATAGGCGCGTTGGCTTCCATATTAGATACTGGGGAGCTCGTAGAGCAAGAGCAAGCTCTATCTTGTCTATTAATTTTATGTAACGGGAATGAAACATGTAGCCAGATGGTCCTGCAAGAAGGCGTAATACCTGCATTGGTGTCATTATCAGTGAATGGTACCTCAAGAGGAAGAGAGAGAGCTCAGAAACTCTTGATGCTGTTCAGAGAGCAACGACAGCGAGACATTTCCCCTCCCAAGACTGACCAGTTCCCGCCTGAACCTGAAACTAGTGATATAGAGATGCCGCCTCCCGAAACAAAACCGCAATGTAAGTCAATGTCTAGAAAAAAAATGGGGAGGGCGCTTAGCTTTTTATGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAG 2307 0.4322 MMDVAEVEENMFAASDAKLHGELCKSLSATYCKLLSIFPTLEEARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIQEIVSELESMELALDPMEKQVGDNLIALLQQGRKFNDSTDNSELECFHQAAIRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTVMGSMEDSVACSHYQAFDRQLSKLSSFNFKPHNRKSWQMALTPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTQQKLAHLSLTPNYCAKGLVASWCEQNGVPIPDGPPESLDFNYWRLALSESESTNSRSVNSVNSCKLKGVKVVPLEETGVSHETGENGSESVSAQEEDTEQYLSFLKVLTDGNSWKGKCKVVERLRLLLRDDEEARIFMGANGFVEALLQFLQSAVSEGNVTAQESGAMALFNLAVNNNRNKEIMLAGGVLSLLEEMIANSNSYGSATALYLNLSCLEEAKPTIGTSQAVQFLIQLLCQPDIEVQCKQDSLHALYNLSTVPSNIPNLISSGIISGLQSLVAGQGDWMGTEKCIAILINLASSQLGREEMISFPGLIGALASILDTGELVEQEQALSCLLILCNGNETCSQMVLQEGVIPALVSLSVNGTSRGRERAQKLLMLFREQRQRDISPPKTDQFPPEPETSDIEMPPPETKPQCKSMSRKKMGRALSFLWKTKSYSVYQC 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1677 768 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Prci14g1677 768 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Prci14g1677 768 PANTHER U BOX DOMAIN-CONTAINING 22 709 - -
Prci14g1677 768 SUPERFAMILY RING/U-box 278 356 - -
Prci14g1677 768 SUPERFAMILY ARM repeat 428 706 IPR016024 -
Prci14g1677 768 Gene3D - 426 606 IPR011989 -
Prci14g1677 768 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Prci14g1677 768 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Prci14g1677 768 MobiDBLite consensus disorder prediction 719 733 - -
Prci14g1677 768 Coils Coil 176 196 - -
Prci14g1677 768 FunFam RING-type E3 ubiquitin transferase 279 353 - -
Prci14g1677 768 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Prci14g1677 768 Gene3D - 607 712 IPR011989 -
Prci14g1677 768 CDD RING-Ubox_PUB 281 333 IPR045210 -
Prci14g1677 768 SMART arm_5 540 582 IPR000225 GO:0005515
Prci14g1677 768 SMART arm_5 455 499 IPR000225 GO:0005515
Prci14g1677 768 MobiDBLite consensus disorder prediction 713 747 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1677 Prci-Chr14 24099574 24105206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1677 2 767 U-box Gene Family AT1G24330 66.239 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1677 - - gmx:100794099 1184.86