Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1608 ATGGATCCTTCTAGGAACGCAGGTGGTGTTGCAGGGACGTTGCCAATTCCCAGGCTATTTGTATGGCCATATGGGGGAAGAGAAGTGTATCTATGTGGTTCATTCACACGGTGGTCTGAGTTTCTACGCATGTCGTCAGTTGAGGGTTGTCCGACTGTATTTCAAGCCGTTCATAGCTTGTCCCCTGGTTATCATGAGTACAAGTTTTGTATTGATGGAGAATGGCGACATGATGAGCATCAGCCTCATGTAGCTGGAGAAAATGGGGTGGTTAATACTGTATTTGTGGCTACTAATCCTAATGAAATGCCTATTCCAACTCCACAAGTAGCTTCTGGTTCTAGCATGGATGTGGATAATGAGGCTATCCGGCGCATGCTTCAGTTGACAGATGGTACGTTGACTGGGGCATTGCCTAGAATGTCAGATGCTTATGTACAGACCTCCCGCCAGCGTATTTCTGCTTTCTTGTCAATGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTATTGCAGTAGATGTTGATCTGCCAGTGAAGCATGCATTTCATATATTGCATGAGCAGGGAATATCTATTGCTCCTCTCTGGGACCTCTGCCAGGGGCATTTTGTTGGCGTTCTTAGTCCTTTGGATTTTATTTTAATTTTGAGAGAGCTTAAGAATCATGGATCCAATTTAACAGAAGAAGAGCTTGAAACACATACTATATCTTCTTGGAAAGAAGGAAAATTATATCTAAACAGGCAACGCAATGGACATGGAACAACCTTTTCAAGACGTTTTATCCATGCAAGACCGTTTGATAATTTGAAAGATATTGCCACAAAGATCCTGCAAAATGAGATTTCAACAGTTCCTGTCATCCATTCGAAGTCTGAAGATGGTTCATTTCCACAGCTGTTATATCTGGCTTCACTTTCTGGAATACTTAATTGCATTTGCAGGTATTTTAGGCATTGCTCTAGTTCATTGCCTATACTCCAATTACCGATTTGTGCAGTTCCTGTGGGAACATGGGTGCCCAAAATTGGGGAATCAAATAGGCGACCTTTAGCTATGTTGAGACCTAGTGCATCTCTTACTTCAGCCCTAAATTTATTAGTTCAAGCCCAAATAAGTTCTATACCGATAGTGGATGACAATGATTCATTACTAGATATATATTGCCGAAGCTTTGGCAAAGGACAGGGCTTATACACGCCTCAATTTTGA 1221 0.4201 MDPSRNAGGVAGTLPIPRLFVWPYGGREVYLCGSFTRWSEFLRMSSVEGCPTVFQAVHSLSPGYHEYKFCIDGEWRHDEHQPHVAGENGVVNTVFVATNPNEMPIPTPQVASGSSMDVDNEAIRRMLQLTDGTLTGALPRMSDAYVQTSRQRISAFLSMHTAYELLPESGKVIAVDVDLPVKHAFHILHEQGISIAPLWDLCQGHFVGVLSPLDFILILRELKNHGSNLTEEELETHTISSWKEGKLYLNRQRNGHGTTFSRRFIHARPFDNLKDIATKILQNEISTVPVIHSKSEDGSFPQLLYLASLSGILNCICRYFRHCSSSLPILQLPICAVPVGTWVPKIGESNRRPLAMLRPSASLTSALNLLVQAQISSIPIVDDNDSLLDIYCRSFGKGQGLYTPQF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1608 406 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 147 394 - -
Prci14g1608 406 ProSiteProfiles CBS domain profile. 165 227 IPR000644 -
Prci14g1608 406 Gene3D Immunoglobulins 16 105 IPR013783 -
Prci14g1608 406 Pfam CBS domain 351 388 IPR000644 -
Prci14g1608 406 Gene3D - 142 324 IPR046342 -
Prci14g1608 406 SMART cbs_1 263 317 IPR000644 -
Prci14g1608 406 SMART cbs_1 353 394 IPR000644 -
Prci14g1608 406 SMART cbs_1 171 220 IPR000644 -
Prci14g1608 406 SUPERFAMILY CBS-domain pair 152 322 IPR046342 -
Prci14g1608 406 CDD E_set_AMPKbeta_like_N 20 96 - -
Prci14g1608 406 Gene3D - 325 395 IPR046342 -
Prci14g1608 406 SUPERFAMILY CBS-domain pair 345 387 IPR046342 -
Prci14g1608 406 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Prci14g1608 406 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Prci14g1608 406 SUPERFAMILY E set domains 17 97 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1608 Prci-Chr14 23470335 23476163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1608 20 96 Protein tyrosine phosphatase (PTP) family AT3G01510 35.443 8.07e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1608 - - gmx:100785692 662.529