Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1603 ATGGAGCGGTACGGCCGGACCAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGGGAAACAGGGCTCGAAGAGGCTGTGTGGCAATTCGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCCGATTGTATCTACTATTTGAGGACTGGTTTTTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCTCGAGACCGTGGCGCGGTTATTGGAGCTGCAAGGACAGGAGGGGAGTTCCCAGAACGAGTAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGCTCATCCTGCAAGTATCACCATCCAAGGCAGGGAGGGGGCACTTTTAGTCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCATATTATGTGAAAACGGGACAATGCAAGTTTGGCAGAACTTGTAAATTCCACCATCCGCAGCCTGCTGGCATGCAAATTCCAGCACAAACACCAGTTCCCCCGGTTTCACCTCTACCTGTACCGGTACCTTCTCCATTATATCCAACTGTACAGCCATCATCTGGCCCTTCATCATCACAATATGGTGTAATGGTTGCAACCCCAAGGCCACCTCTGTTACCTGGCTCTTTAGTCCATAGTCCCTATGGGCAGCTGGTTTTGTCCCCGGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCCTCCTGCAAGCCCCTTATTTCCTTCAAGTAATCCATCTAACATTGGTTCAGCGCAGCTTTATGGGATGGGTCAGCTACCTCCATCAGCATCATCTTATAGTGGACAGTATCAACCTCCAGGCTCCTCAGTCGGTCCTTCAGGCAGTAGTCAGAAGGAGCAATCATTTCCAGAAAGACCTGGTCAGCCGGAATGTCAGTATTATATGAAAACGGGGGAGTGTAAATTTGGTCCATCCTGTAGATATCATCATCCACCTGAATTAGTTGCTCCAAAAACAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGGGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAGTTTGGGTCAGCCTGCAAATTTGATCATCCTATTGGAGCATTGAGTTATAGTCCATCTGCTTCCTCCCTTGCTGATATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGCACTCTTGCCCCATCATCTTCATCAGAATTGCGGCCTGAACTCATCTCAGGATCCGGCAATGAGTCTGCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAGTTGGCTTGACCTTGTCATCTGGTGGATCCATTTCTCAATCAACTGTTCAACAATCTGCTCAGAGTTCCAGCCCTTCAGCAATTACCAATAGCATTGCAAGCAGCTCGATCTCTCACACCTCTAGTTAA 1452 0.4979 MERYGRTSEGSQSDPSPEWTGTGGETGLEEAVWQFELGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGEFPERVGQPVCQYYMRTGSCKFGSSCKYHHPRQGGGTFSPVSLNYYGYPLRPGEKECSYYVKTGQCKFGRTCKFHHPQPAGMQIPAQTPVPPVSPLPVPVPSPLYPTVQPSSGPSSSQYGVMVATPRPPLLPGSLVHSPYGQLVLSPAVVPFPGWSPYQPPASPLFPSSNPSNIGSAQLYGMGQLPPSASSYSGQYQPPGSSVGPSGSSQKEQSFPERPGQPECQYYMKTGECKFGPSCRYHHPPELVAPKTNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGSACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSELRPELISGSGNESASSRISSSMSTSTASVGLTLSSGGSISQSTVQQSAQSSSPSAITNSIASSSISHTSS 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1603 483 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Prci14g1603 483 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Prci14g1603 483 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Prci14g1603 483 MobiDBLite consensus disorder prediction 450 483 - -
Prci14g1603 483 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Prci14g1603 483 Gene3D - 294 343 - -
Prci14g1603 483 Gene3D - 44 121 - -
Prci14g1603 483 MobiDBLite consensus disorder prediction 408 434 - -
Prci14g1603 483 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Prci14g1603 483 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Prci14g1603 483 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Prci14g1603 483 FunFam Zinc finger nuclease 2 45 122 - -
Prci14g1603 483 Gene3D - 348 398 - -
Prci14g1603 483 FunFam CCCH type zinc finger protein 302 387 - -
Prci14g1603 483 PANTHER PROTEIN PHOSPHATASE RELATED 35 412 - -
Prci14g1603 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Prci14g1603 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Prci14g1603 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Prci14g1603 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Prci14g1603 483 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Prci14g1603 483 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Prci14g1603 483 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Prci14g1603 483 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Prci14g1603 483 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Prci14g1603 483 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Prci14g1603 483 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Prci14g1603 483 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Prci14g1603 483 MobiDBLite consensus disorder prediction 1 25 - -
Prci14g1603 483 MobiDBLite consensus disorder prediction 274 302 - -
Prci14g1603 483 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Prci14g1603 483 MobiDBLite consensus disorder prediction 274 307 - -
Prci14g1603 483 Gene3D - 124 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1603 Prci-Chr14 23391874 23398624 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1603 1 445 C2H2 Transcription Factor Family AT5G18550 57.826 3.37e-161 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci14g1603 zf-CCCH 2.5e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1603 - - gmx:100789405 658.677