Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1602 ATGGAGCGGTACGGCCGGACCAGTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGGGAAACAGGGCTCGAAGAGGCTGTGTGGCAATTCGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCCGATTGTATCTACTATTTGAGGACTGGTTTTTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCTCGAGACCGTGGCGCGGTTATTGGAGCTGCAAGGACAGGAGGGGAGTTCCCAGAACGAGTAGGCCAGCCTGTATGCCAGTATTATATGAGGACAGGATCATGCAAATTTGGCTCATCCTGCAAGTATCACCATCCAAGGCAGGGAGGGGGCACTTTTAGTCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAGTGTTCATATTATGTGAAAACGGGACAATGCAAGTTTGGCAGAACTTGTAAATTCCACCATCCGCAGCCTGCTGGCATGCAAATTCCAGCACAAACACCAGTTCCCCCGGTTTCACCTCTACCTGTACCGGTACCTTCTCCATTATATCCAACTGTACAGCCATCATCTGGCCCTTCATCATCACAATATGGTGTAATGGTTGCAACCCCAAGGCCACCTCTGTTACCTGGCTCTTTAGTCCATAGTCCCTATGGGCAGCTGGTTTTGTCCCCGGCTGTAGTCCCTTTTCCAGGTTGGAGTCCTTATCAGCTTTATGGGATGGGTCAGCTACCTCCATCAGCATCATCTTATAGTGGACAGTATCAACCTCCAGGCTCCTCAGTCGGTCCTTCAGGCAGTAGTCAGAAGGAGCAATCATTTCCAGAAAGACCTGGTCAGCCGGAATGTCAGTATTATATGAAAACGGGGGAGTGTAAATTTGGTCCATCCTGTAGATATCATCATCCACCTGAATTAGTTGCTCCAAAAACAAATGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGAATTTACAAGAAAAATAGAGGATCCAATGGAGATAGGGGGGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAGTTTGGGTCAGCCTGCAAATTTGATCATCCTATTGGAGCATTGAGTTATAGTCCATCTGCTTCCTCCCTTGCTGATATGCCGGTTGCACCCTATCCTGTGGGTTCATCAATTGGCACTCTTGCCCCATCATCTTCATCAGAATTGCGGCCTGAACTCATCTCAGGATCCGGCAATGAGTCTGCATCATCCAGAATATCTTCATCAATGAGCACATCAACGGCATCAGTTGGCTTGACCTTGTCATCTGGTGGATCCATTTCTCAATCAACTGTTCAACAATCTGCTCAGAGTTCCAGCCCTTCAGCAATTACCAATAGCATTGCAAGCAGCTCGATCTCTCACACCTCTAGTTAA 1434 0.4951 MERYGRTSEGSQSDPSPEWTGTGGETGLEEAVWQFELGGGESYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGEFPERVGQPVCQYYMRTGSCKFGSSCKYHHPRQGGGTFSPVSLNYYGYPLRPGEKECSYYVKTGQCKFGRTCKFHHPQPAGMQIPAQTPVPPVSPLPVPVPSPLYPTVQPSSGPSSSQYGVMVATPRPPLLPGSLVHSPYGQLVLSPAVVPFPGWSPYQLYGMGQLPPSASSYSGQYQPPGSSVGPSGSSQKEQSFPERPGQPECQYYMKTGECKFGPSCRYHHPPELVAPKTNVVLSPVGLPLRPGIYKKNRGSNGDRGAPPCTHYAQRGVCKFGSACKFDHPIGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSELRPELISGSGNESASSRISSSMSTSTASVGLTLSSGGSISQSTVQQSAQSSSPSAITNSIASSSISHTSS 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1602 477 ProSiteProfiles Zinc finger C3H1-type profile. 344 372 IPR000571 GO:0046872
Prci14g1602 477 SMART c3hfinal6 285 312 IPR000571 GO:0046872
Prci14g1602 477 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Prci14g1602 477 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Prci14g1602 477 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Prci14g1602 477 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Prci14g1602 477 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Prci14g1602 477 ProSiteProfiles Zinc finger C3H1-type profile. 285 313 IPR000571 GO:0046872
Prci14g1602 477 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Prci14g1602 477 PANTHER PROTEIN PHOSPHATASE RELATED 35 406 - -
Prci14g1602 477 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Prci14g1602 477 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Prci14g1602 477 SUPERFAMILY CCCH zinc finger 289 313 IPR036855 GO:0046872
Prci14g1602 477 MobiDBLite consensus disorder prediction 401 428 - -
Prci14g1602 477 FunFam Zinc finger nuclease 2 45 122 - -
Prci14g1602 477 MobiDBLite consensus disorder prediction 442 477 - -
Prci14g1602 477 MobiDBLite consensus disorder prediction 255 288 - -
Prci14g1602 477 MobiDBLite consensus disorder prediction 255 283 - -
Prci14g1602 477 SUPERFAMILY CCCH zinc finger 349 374 IPR036855 GO:0046872
Prci14g1602 477 Gene3D - 333 393 - -
Prci14g1602 477 Gene3D - 124 170 - -
Prci14g1602 477 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Prci14g1602 477 MobiDBLite consensus disorder prediction 1 25 - -
Prci14g1602 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Prci14g1602 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 287 312 IPR000571 GO:0046872
Prci14g1602 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Prci14g1602 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 370 IPR000571 GO:0046872
Prci14g1602 477 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Prci14g1602 477 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Prci14g1602 477 Gene3D - 44 121 - -
Prci14g1602 477 Gene3D - 274 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1602 Prci-Chr14 23391874 23398626 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1602 1 439 C2H2 Transcription Factor Family AT5G18550 55.297 1.81e-153 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci14g1602 zf-CCCH 8.4e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1602 - - qsa:O6P43_003530 622.468