Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1591 ATGGGAAGGCAGTCCAGGCTACAGGCTTCTTCCGATGAAGCCATTTCCAACGGCTCCGATTCCTCGGAAGAGGATTTTGTCAACCAGCAGATCAACGAGGAAGAGGACGATGAAGAGTTGGAAGCTGTTGCTCGCTCTGCTAGCTCAGATGATAATGAAGCCGCTGACAGTGATGCTCCGGACTCTGATGACGACGCGGACGCCACTGGAGATGTTGACGAGGAGGATCAGGATGATGGACATGTTGATCCAGAAATTAGCAAACGTGAGAAGGCCAGATTAAGAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAGATGTTGGATAAGCAAAATGCTGCTATTGATGCAGATATGAACAATAAAGGAAAGGGGCGCTTGAAATATCTCTTACAGCAAACTGAGATATTTGCTCATTTCGCCAAAGGTGATCAAAGTACCTCTCAGAAGAAGTCAAAAGGAAGGGGTCGCCATGCATCTAAAGTAACTGAAGAAGAGGAAGATGAAGAGTACCTCAAAGAAGAAGAAGATGGTTTAGCAGGAAATACACGGCTGGTTTCACAACCATCATGTATCCAAGGAAAGATGAGGGATTACCAACTTGCTGGTCTAAACTGGCTTATAAGATTGTATGAGAATGGTATCAATGGAATTCTGGCAGATGAAATGGGGCTTGGTAAAACCTTGCAAACTATATCCTTATTGGGTTATTTGCATGAGTTCAGAGGAATTAAAGGTCCTCATATGGTAGTTGCTCCTAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGTCCTGTTCTGCGTGCAATAAAGTTTCTTGGCAATCCTGATGAAAGGAGACACATCAGAGAGGAATTATTGGTTGCTGGGAAGTTTGATGTATGTGTTACTAGTTTTGAGATGGCAATCAAGGAGAAGTCTGCATTGCGTCGTTTTAGTTGGCGCTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAACTCTTTACTTTCCAAGACAATGAGACTATACAATACAAACTATCGGCTTCTTATCACTGGCACACCTCTTCAGAACAATCTCCATGAGCTCTGGTCTCTGCTCAATTTTCTTCTTCCAGAAATTTTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCCGGTGACAATGACCAGCAAGAGGTCGTTCAACAACTGCACAAGGTCCTTCGTCCGTTTCTCCTTCGAAGGTTAAAGTCAGATGTTGAGAAGGGTTTGCCACCAAAAAAAGAAACCATTCTCAAAGTAGGAATGTCACAGATGCAGAAACATTATTACAGAGCTTTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGCGAAAACGCCTCCTAAATATAGCTATGCAACTGCGTAAATGTTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACAACTGGAGAACATCTCATTACAAATGCTGGTAAAATGGTTCTTTTGGATAAATTGCTTCCTAAATTGAAAGAGCGAGACTCTAGGGTGCTTATATTTTCTCAGATGACCAGGCTACTAGACATACTTGAAGATTACTTGATGTTTCGTGGATATCTATATTGTCGTATTGATGGTAATACTGGTGGAGAAGATCGTGATGCTTTTATTGAAGCTTTCAATAAACCTGGAAGTGAAAAATTTGTCTTCTTGTTATCAACTCGGGCTGGAGGTCTTGGCATCAATCTCGCTACTGCAGATGTTGTCATTCTATATGACAGTGACTGGAACCCACAAGTTGACTTACAGGCCCAGGACCGGGCACATAGGATTGGCCAAAAGAAAGAAGTTCAAGTTTTCCGTTTCTGCACTGAGTATGCCATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCACTCGATGCACTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTTAGGTTTGGTGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAAGAAGCAACAGCTGAACTTGACGCCAAGATGAAGAAATTTACTGAAGATGCAATCAAGTTCAAGATGGATGACTCTACTGAGCTGTATGATTTTGATGATGATAAGGATGATAACAAATTCAAAAAAATCGTTAGTGAAAATTGGATCGAGCCACCAAAAAGAGAGCGCAAGCGCAATTACTCAGAATCTGAATACTTCAAGCAAACATTGCGCCAAGGTGCTCCTACAAAACCTAGAGAGCCCCGTATTCCCAGGATGCCTCAGCTGCATGATTTTCAATTCTTCAACACACAAAGGTTGAGTGAGCTGTATGAAAAGGAAGTACGCTATCTCATGCAAACCCATCAAAAGAATCAGATAAAGGACTCAATTGATGTTGATGAACCAGAAGAAATGGGAGATCCTTTGACTGCTGAGGAGCTGGAAGAGAAAGAACGCCTGCTAGAGGAGGGATTTTCATCGTGGAGCCGAAGGGATTTTAACACTTTCATCAGGGCATGTGAAAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCTGATATGGAAGGTAAAATGGAGGAGGAAGTTGACAGATACGCAAAGGTCTTCAAAGAGAGATACAGGGAATTAAATGATTATGATCGAATTATTAAGAATATTGAAAGAGGGGAGGCAAGAATATCCCGTAAAGATGAGATTATGAAGGCTGTTGGGAAGAAGTTGGATCGCTATAAGAATCCATGGCTAGAGTTGAAGATACAATATGGCCAAAATAAGGGGAAGTTATACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGTTATGGGAATTGGGATGAGTTGAAGGCGGCATTTCGCACATCACCCTTGTTTCGGTTTGATTGGTTTGTTAAGTCCCGCACAACACAGGAACTTGCAAGGAGATGTGACACACTCATTCGATTGGTAGAGAAGGAAAACCAAGAATTTGATGAGAGGGAGAGACAAGCTCGTAAAGAGAAGAAACTTGCCAAGAACATGATGACCCCTTCAAAACGTGCATTGGCAAGACAGACGGATAGTCCATCTTCTCTGAAGAAGCGCAAGCAATTAACTATGGATGACTATGTTAGCACGGGAAAGAGGAGAAAGTAG 3216 0.4142 MGRQSRLQASSDEAISNGSDSSEEDFVNQQINEEEDDEELEAVARSASSDDNEAADSDAPDSDDDADATGDVDEEDQDDGHVDPEISKREKARLREMQKLKKQKIQEMLDKQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDQSTSQKKSKGRGRHASKVTEEEEDEEYLKEEEDGLAGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPVLRAIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSSETFDEWFQISGDNDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKHYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYLYCRIDGNTGGEDRDAFIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYAIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDSTELYDFDDDKDDNKFKKIVSENWIEPPKRERKRNYSESEYFKQTLRQGAPTKPREPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQIKDSIDVDEPEEMGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASDMEGKMEEEVDRYAKVFKERYRELNDYDRIIKNIERGEARISRKDEIMKAVGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKNMMTPSKRALARQTDSPSSLKKRKQLTMDDYVSTGKRRK 1071
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1591 1071 Coils Coil 1007 1030 - -
Prci14g1591 1071 CDD SANT 849 899 IPR001005 -
Prci14g1591 1071 Pfam SNF2-related domain 210 477 IPR000330 GO:0005524|GO:0140658
Prci14g1591 1071 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 209 374 IPR014001 -
Prci14g1591 1071 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 98 1059 - -
Prci14g1591 1071 SMART sant 948 1009 IPR001005 -
Prci14g1591 1071 SMART sant 846 895 IPR001005 -
Prci14g1591 1071 Gene3D - 846 900 - -
Prci14g1591 1071 MobiDBLite consensus disorder prediction 81 99 - -
Prci14g1591 1071 CDD SF2_C_SNF 498 623 - -
Prci14g1591 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 747 845 - -
Prci14g1591 1071 Coils Coil 87 107 - -
Prci14g1591 1071 SMART helicmild6 528 612 IPR001650 -
Prci14g1591 1071 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 758 848 IPR036306 GO:0003677|GO:0006338|GO:0031491
Prci14g1591 1071 MobiDBLite consensus disorder prediction 27 41 - -
Prci14g1591 1071 MobiDBLite consensus disorder prediction 1020 1034 - -
Prci14g1591 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 934 1038 - -
Prci14g1591 1071 Gene3D - 418 710 IPR027417 -
Prci14g1591 1071 Gene3D - 934 1037 - -
Prci14g1591 1071 Gene3D ISWI, HAND domain 747 845 IPR036306 GO:0003677|GO:0006338|GO:0031491
Prci14g1591 1071 Gene3D - 198 413 IPR038718 -
Prci14g1591 1071 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 502 653 IPR001650 -
Prci14g1591 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 418 710 - -
Prci14g1591 1071 MobiDBLite consensus disorder prediction 143 177 - -
Prci14g1591 1071 Pfam Helicase conserved C-terminal domain 500 612 IPR001650 -
Prci14g1591 1071 MobiDBLite consensus disorder prediction 54 80 - -
Prci14g1591 1071 ProSiteProfiles SANT domain profile. 845 897 IPR017884 -
Prci14g1591 1071 MobiDBLite consensus disorder prediction 1049 1071 - -
Prci14g1591 1071 Gene3D iswi atpase 901 933 - -
Prci14g1591 1071 Pfam SLIDE 903 1013 IPR015195 GO:0003677|GO:0005634|GO:0006338
Prci14g1591 1071 MobiDBLite consensus disorder prediction 1 26 - -
Prci14g1591 1071 CDD DEXHc_SMARCA1_SMARCA5 194 414 IPR044754 GO:0005524
Prci14g1591 1071 MobiDBLite consensus disorder prediction 1020 1071 - -
Prci14g1591 1071 FunFam Chromatin-remodeling complex ATPase 198 413 - -
Prci14g1591 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 695 IPR027417 -
Prci14g1591 1071 SUPERFAMILY Homeodomain-like 849 899 IPR009057 -
Prci14g1591 1071 SUPERFAMILY Homeodomain-like 901 1023 IPR009057 -
Prci14g1591 1071 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 412 IPR027417 -
Prci14g1591 1071 SMART ultradead3 193 385 IPR014001 -
Prci14g1591 1071 Pfam HAND 759 841 IPR015194 GO:0003677|GO:0006338|GO:0031491
Prci14g1591 1071 MobiDBLite consensus disorder prediction 1 99 - -
Prci14g1591 1071 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 846 900 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1591 Prci-Chr14 23246730 23254607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1591 218 639 RAD5 or RAD16-like Gene Family AT1G02670 26.931 9.25e-41 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Prci14g1591 SNF2_N 1.7e-71 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1591 K11654 - gmx:100809750 1901.33