LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci14g1410	ATGGCGAATCGACTGAAGGAAGATGAGAAAAATGAGCGAATAATTCGAGGTCTTCTCAAACTACCAGCGAATCGCAGATGTATTAATTGCAACAGTCTGGGGCCGCAATATGTATGCACAAATTTCTGGACATTTGTTTGCACAAGCTGTAGTGGAATACACCGAGAATTTACGCATCGAGTAAAGTCAATATCAATGGCCAAGTTCACCTCGCAAGAAGTTAGTGCACTTCAGGAAGGAGGGAATCAGCATGCAAAAGAAGTTTATTTTAAACAATGGGATCCTAAAAGTTATTCTCTCCCTGATAACAGTAATGTTGGCAGGCTCCGCAACTTTATTAAACAAGTTTATGTGGATAAAAGATTCACTGATGAGAGGACCTATGACAAATCACAGAGAGTAAATACAGGTGACAAGGATCATTTCTCTGAAAACTCGAGAGTTCAATCATATCAGGGTGGTCCTAAAAACCCACCATGTGATGACACATATAAACACCAATATAGTGACAGCTCTAGTCTAGGTGGAAGAAGTCCTGGGCATGATCAAGAAAGTAGGGAGTATAGTAATGAGAAGAGAAGTCTTAGTCATCCTCCAATTATCAACGATTGGCGCCAAGAAGATAGAGTTGGAGATGAGAGGAGGTTTGAAGGTCGTAGAGGATCTGATGGAGATTATAAGCTGGAAGACCAATTGCCTGGGCAAGCCAACAACCTAGATTCTTCAAGTCCACCTGTGGTTCGGTCTGTCAGAGATATTTTGGGAGAAAATGCAGTTCCTCTTCAAATAAATGGAACCCCTGAAACAAATAGTGGAAAAGCTAATGATGGCTTAGCTCTCACACAGAGGACTGTATCTTCCAGTAGCTTCGCATCCAGCATTGGAAACCCTGCAGAAGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGATGAGCCTGAGCCTCGGGTAGCTCCAGCAATTATTTACACCCAACAAACTACCACACAATCCATTGCAGAGCAACCAAATTCCAGAGATGACAACAATTGGGCCTCTTTTGATGTGACCCTAGAAGCAAAAGCAACTCAAACTCCTTCAAATGTAAATGCACTGGAATCCATGCTTTCCCAATTGTCAGTATCATCATCATTACCGGCTCATGCTCCTCAAGTCCAACATGGTTCCAGTGTTGTAACACCTGTTCCTGGGAGGAGTATGACATTACAAAGAACTGGGAACCTATCATTTTCACCTGCTGGGCCTGCACCAGCACCATCTCTTACTGCTACTGCCGTTGGAGCTGCAACTATTAGCAGCTTTGCGACTTTTCCATCTGGTGGTTCTTCAGCATTGCAGCATCCACAGCCTTTGTTCCCTCCCAATGTTGGTCAGTCTTTGACTCATCAGTCTACACCACAACCAATAGGAGAATCGAATAATCAGCCATGGAGTATGCCTCCAGCTCCAACAATACATGGCCATCCGAGCATGTCACTGCCACATGTATCCCATCTTATCTCTAAGCCTGCCACTGAGACTAGCTCCAGTGCTGCTCCAGGACTGTCTGTTGAAGTAAAATCAAGTGGAAGAAAAGAACTTCCTGAGGATCTTTTTACTGTAAAGTATTATTGCTTCCCTGCTGCAGTTCCAGGATGGCATATGGTCCCACCTCAGGGCAATGGAATCTCAATGCCATATAATACTGTGGTAATGCTATTGCAATCCAACTGCATGTGCATACAGCCCATGCCAAATCTTCAGCGACCATCAAAATCAACAAACCCATTTGAAATTGGCAATGAACCACTTCCGGTTCAAACAACTTTTCCTTCGAGATCATCCTTGCAACGTGGTCTGCCAAGTGTATCAACTTCAGGTTTAATGCTTCCTTCAAGCCTAAGTAATCCATCACTTGCATGGAATCCGCACGGGTATGGATTAGTGCAGCCTCCACTAACACAGCCTCATCCATTAGCAATGGCACCAAGGCCTTACACGGGGCAACAAGTGCGAATGAACATGGCAATGCCAAGGCATCAGCATCAGGAAATTCGGAGCTTTGGTGCCGAGGGAGCTGCTTTTGGCTTCACAAGCTCAGATCAGCATCTGACTGGTACATTCTCAGCCCCTCCTTCCTCAAACCTCTCTTCTGCAGGAAGGAATCCATTTGGATGA	2163	0.4443	MANRLKEDEKNERIIRGLLKLPANRRCINCNSLGPQYVCTNFWTFVCTSCSGIHREFTHRVKSISMAKFTSQEVSALQEGGNQHAKEVYFKQWDPKSYSLPDNSNVGRLRNFIKQVYVDKRFTDERTYDKSQRVNTGDKDHFSENSRVQSYQGGPKNPPCDDTYKHQYSDSSSLGGRSPGHDQESREYSNEKRSLSHPPIINDWRQEDRVGDERRFEGRRGSDGDYKLEDQLPGQANNLDSSSPPVVRSVRDILGENAVPLQINGTPETNSGKANDGLALTQRTVSSSSFASSIGNPAEVKLETTKSLIDFDDEPEPRVAPAIIYTQQTTTQSIAEQPNSRDDNNWASFDVTLEAKATQTPSNVNALESMLSQLSVSSSLPAHAPQVQHGSSVVTPVPGRSMTLQRTGNLSFSPAGPAPAPSLTATAVGAATISSFATFPSGGSSALQHPQPLFPPNVGQSLTHQSTPQPIGESNNQPWSMPPAPTIHGHPSMSLPHVSHLISKPATETSSSAAPGLSVEVKSSGRKELPEDLFTVKYYCFPAAVPGWHMVPPQGNGISMPYNTVVMLLQSNCMCIQPMPNLQRPSKSTNPFEIGNEPLPVQTTFPSRSSLQRGLPSVSTSGLMLPSSLSNPSLAWNPHGYGLVQPPLTQPHPLAMAPRPYTGQQVRMNMAMPRHQHQEIRSFGAEGAAFGFTSSDQHLTGTFSAPPSSNLSSAGRNPFG	720

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci14g1410	720	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Prci14g1410	720	CDD	ArfGap_AGFG	12	124	-	-
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	441	525	-	-
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	164	179	-	-
	Prci14g1410	720	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Prci14g1410	720	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Prci14g1410	720	Pfam	Putative GTPase activating protein for Arf	13	125	IPR001164	GO:0005096
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	129	145	-	-
	Prci14g1410	720	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	124	IPR037278	-
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	202	227	-	-
	Prci14g1410	720	PANTHER	ARFGAP/RECO-RELATED	1	720	IPR044820	GO:0005096
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	441	482	-	-
	Prci14g1410	720	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Prci14g1410	720	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Prci14g1410	720	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	696	720	-	-
	Prci14g1410	720	Gene3D	Arf GTPase activating protein	1	136	IPR038508	-
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	129	245	-	-
	Prci14g1410	720	MobiDBLite	consensus disorder prediction	503	518	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci14g1410	Prci-Chr14	20970302	20977822	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci14g1410	12	122	C2H2 Transcription Factor Family	AT4G05330	34.188	6.20e-12	65.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci14g1410	-		-	pcin:129292898	1435.62