Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1371 ATGAATGCCATTGATCAATGTTGGAGGATGAACCCCTTATGGCAAAGACATCGCTTGCAACTTGCAACATGCTCGATGGGTTATGCAGGAAAGATGACAAACAACATTGGAAAAGACATCATCCATTACAAAGTTATAGATCCTAACGATGACCCAATAAACCCTAAACTAGGCACATTGAGATATGGAGCTTCCATGATTCAAGGTAAAGCTTGGATCACATTCCAAAGAGATATGCACATTAAACTTCTTAGGCCCCTTTTCATCAGCAGCTTCACTGCCATTGATGGCCGTGGTGTAAACGTTCACATTGCTGATAATGCATGTTTGATGATCTTTAAGGAAACAAACATAATAATACATGGCATTCGAATTCATCACTGTAGGCCTCAAGCTGCTGGGATGGTAATGGGCCCAAAAGGGAAGGTGATTCAAGTGGGTCAGGTTGACGGGGATGCAATTAGATTGGTTACAGCAAACAAGGTCTGGATTGACCATAATACCTTATATAATTGTCAAGATGGCCTCCTTGATGTCACAAGGGGTTCCACTAATGTCACTATCTCTAATAATTGGTTTAAAGACCAAGACAAGGTTATGCTTCTTGGACATGATGATGGTTATGCTAGAGATAAGAATATGAAGGTCACCGTGATTTACAACCATTTTGGACCAAATTGCAACCAACGTATGCCTAGAATTCGTCATGGGTATGCACATGTGGCCAACAACCTCTACCAAGGATGGGTGCAATATGCCATTGGTGGAAGTATGGGACCTAGCCTCAAGAGTGAAGCTAACCTCTTTATAGCACCAACATTTGGAAGCAAAGAGGTGACGTGGAGAAAAGACAGCAATGAAGATAAAGGAGAGTGGGAATTTCATTCAGTAAGGGATGCATTTGAAAACGGAGCTTGCTTCACAGAAACAAAAGGAGGGCGTGTGCTAAAGCCTTATTATAATAGGGAACAAATTTTTAAAGTTGTGGATGCCAAATATGTGAGGGCATTAACAAGATCATCAGGAGCCTTATGCTGCACAAAAACCTCTAGATGCTAA 1059 0.4136 MNAIDQCWRMNPLWQRHRLQLATCSMGYAGKMTNNIGKDIIHYKVIDPNDDPINPKLGTLRYGASMIQGKAWITFQRDMHIKLLRPLFISSFTAIDGRGVNVHIADNACLMIFKETNIIIHGIRIHHCRPQAAGMVMGPKGKVIQVGQVDGDAIRLVTANKVWIDHNTLYNCQDGLLDVTRGSTNVTISNNWFKDQDKVMLLGHDDGYARDKNMKVTVIYNHFGPNCNQRMPRIRHGYAHVANNLYQGWVQYAIGGSMGPSLKSEANLFIAPTFGSKEVTWRKDSNEDKGEWEFHSVRDAFENGACFTETKGGRVLKPYYNREQIFKVVDAKYVRALTRSSGALCCTKTSRC 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1371 352 SMART amb_all 78 275 IPR002022 -
Prci14g1371 352 Gene3D - 1 345 IPR012334 -
Prci14g1371 352 Pfam Pectate lyase 92 269 IPR002022 -
Prci14g1371 352 SUPERFAMILY Pectin lyase-like 2 344 IPR011050 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 323 346 IPR018082 -
Prci14g1371 352 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Prci14g1371 352 PANTHER PECTATE LYASE 18-RELATED 1 349 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1371 Prci-Chr14 19190250 19191602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1371 32 279 Polysaccharide Lyase AT5G09280 70.161 3.69e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1371 K01728 - gmx:100780437 624.394