LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci14g1239	ATGAGCAGTTTGAAGAACTCTGATCTGATAGACGCCAAGCTGGAAGAGAATCAGTCGTGTGGATCCAAGCAGTGCCCTGGTTGCGGACACAAGTTTCAATCCAAGCCTGACTGGGTGGGTCTACCAGCAGGAGTTAAATTTGATCCAACAGACCAAGAACTCATAGAACACCTCGAAGCCAAAGTCGAATCCAACCACATGATCAAATCTCACCCTCTCATCGACGAGTTCATTCCCACCATTGAAGGCGAAGATGGAATCTGCTATACCCATCCAGAGAAACTCCCAGGAGTAACAAGGGATGGATTGAGCAGGCACTTCTTTCACAGGCCATCGAAGGCATACACGACAGGGACGAGGAAGAGAAGGAAAATCCAGAACGAGTGTGACTTACAAGGAGGAGAGACAAGATGGCACAAGACAGGAAAAACCAGACCAGTTCTGGTGAATGGAAAACAAAAAGGTTGCAAGAAAATCCTCGTACTGTACACAAACTTTGGGAAGAACAGAAAGCCTGAGAAGACCAACTGGGTGATGCATCAGTATCATCTGGGACAGCACGAGGAAGAGAAAGAAGGAGAGCTTGTCGTCTCCAAAATATTCTTCCAGACACAGCCCAGACAATGCACCACCACTACCAACAACAACAACGTTAACACTGATAATAATAATAATTGGTCGGCGGCGGCGGAGAGAAGCACGACGACCGGTGAGGCGAGCGGAGATCAGCCGAACAGTAATAGTAGGAGAGAGAGTACAAGTGGAAGTTGTTCTTCTAAAGAGATAGTCACTACGACGACTCATCACTCTCATCATGACGTCTCTAATACTGTTGCCGTTGGTGTTCCTCCATTAACGTCCTTCACTGCTTTGGATATTCATCACCACCTCAAATCCGACCATTTCAGCTTCATCCCATTCAGAAAAACCTTCGATGAGGTGGGAATAGGAGCTGCTTCGAGAGGAAGAGAAATGGTGCAGCCTTCAGGTTCATCAGGAGAAGGGAATCATCATCATCTTCATCATCATCAACATCATCAACAACAACAACATATTGCAGAAAATAATAATACAGCATTTCATCATCATATCAGTAGGCCTTCACATCCTATTTCTAACAAAATCTCTCCACCTCCTCCTTCACACCTTACCTCCGTCATCCTTGACGATGTCACCAGATTAATGCTCCAAAATGATCATTTCCAGCAACATCATAAACCAGAAGGAAGGTCTGCGTCTGGCTTGGAGGAACTAATTATGGGATGCACTACTTCAACTAATTCTAAAGAGGATTCATCTATCACACATTATCCACAAGAACCAGAATGGTTGACGTACCCTTCATACTGGCCTGATTCTGACAATCCAGGTCATCATCATCAGTAG	1386	0.4524	MSSLKNSDLIDAKLEENQSCGSKQCPGCGHKFQSKPDWVGLPAGVKFDPTDQELIEHLEAKVESNHMIKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVLVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFFQTQPRQCTTTTNNNNVNTDNNNNWSAAAERSTTTGEASGDQPNSNSRRESTSGSCSSKEIVTTTTHHSHHDVSNTVAVGVPPLTSFTALDIHHHLKSDHFSFIPFRKTFDEVGIGAASRGREMVQPSGSSGEGNHHHLHHHQHHQQQQHIAENNNTAFHHHISRPSHPISNKISPPPPSHLTSVILDDVTRLMLQNDHFQQHHKPEGRSASGLEELIMGCTTSTNSKEDSSITHYPQEPEWLTYPSYWPDSDNPGHHHQ	461

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Prci14g1239	461	MobiDBLite	consensus disorder prediction	321	351	-	-
Prci14g1239	461	SUPERFAMILY	NAC domain	36	203	IPR036093	GO:0003677\|GO:0006355
Prci14g1239	461	Gene3D	NAC domain	50	208	IPR036093	GO:0003677\|GO:0006355
Prci14g1239	461	Pfam	No apical meristem (NAM) protein	42	184	IPR003441	GO:0003677\|GO:0006355
Prci14g1239	461	MobiDBLite	consensus disorder prediction	208	275	-	-
Prci14g1239	461	ProSiteProfiles	NAC domain profile.	41	203	IPR003441	GO:0003677\|GO:0006355
Prci14g1239	461	MobiDBLite	consensus disorder prediction	208	274	-	-
Prci14g1239	461	PANTHER	NAC DOMAIN-CONTAINING PROTEIN 73	6	337	IPR044799	GO:0003700
Prci14g1239	461	FunFam	NAC domain-containing protein 73	50	207	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci14g1239	Prci-Chr14	14041333	14045737	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci14g1239	4	455	NAC Transcription Factor Family	AT5G56620	49.057	1.18e-131	385

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Prci14g1239		NAM	3.3e-23	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci14g1239	-		-	gmx:100791884	619.002

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