Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1230 ATGATGCTCGGTGAGTCCCATCACACAAATCCAACGGTCCAAGTTCCTCCATGGCCCCTCAACCTCGATGATTTGACCTCTGATATCTGTTCTCCTTACCCGGTCAGTGGTATCTCCGGAGACTCCGACGGTAATGCCAGCACCGGCGATTACTCCCCGTTTTACTTGCAAGAGGCTCTCTCGGCGCTACAGCGTTATCTACCCTCCAACGACGCCGACGTCGATTCAGACACGGAGGTTCTGGGTCGGGACTCCGATGCTCCGGTCGATGCCTACTCCTGCGATCATTTCCGTATGTACGAGTTCAAGGTGAGGAGGTGCGCGCGCGGCAGGTCACATGACTGGACGGAATGCCCTTATGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGACCCGAGGAAGTATCATTATTCCGGCACTGCATGCCCCGAATTTCGCAAAGGGAGCTGTAAGAAAGGGGATGCGTGTGAGTTCGCTCATGGAGTATTTGAGTGTTGGCTTCATCCGTCTCGTTATCGTACGCAGCCGTGTAAGGACGGTACGAGCTGCCGGAGAAGGGTGTGCTTTTTTGCTCACACGCCTGAGCAGCTAAGGATTCTGCCTCAGCAGAGTCCAAGGAGTGCTAACTCGGCAGATTCATACGACGGCTCTCCGTTGAGGCAGGCGGTTGAGTCTTCTTGTGCTAAAACGCTGCCGTTCATGTTGTCTCCCTTGTCGGTTTCGCCGCCGGCTAGTTCTCCAACGGAATCTCCTCCTCTGTCTCCGATGGCGCAGTCTTTAAGCCGGTCCCCTTGTTCGAGCTCCATCAATGAGATGGTGGCTACTCTCCGTAATTTGCAGCTTGGCAAGGGTAAGTCCTTCTCGTTGTCCTCTTCTTGGAATGTTCCTATGGGGTCTCCCTGCTTCGGGTCTCCTAGGGGATCCGTGCTCCGACCCGGGTTCTACAGCCTGCCCACCACCCCAACTCAGGCACCAACTCTCGCCGGCGGCAGCTATTTTGATATTTGGGATCTGAGTTGCGAGGAGGAGCCGGTAATGGAGCGGGTAGAGTCCGGGAGGAACATAAGGGCAAAGATGTTCGAGAAATTGAGCAAAGAGAATTCCCTGGAGAGGTCGGACCCGGGTTCTTCGGGTGGAGCTCCGGATGTAGGGTGGGTTTCAGAGCTGGTGAAGTAA 1176 0.5578 MMLGESHHTNPTVQVPPWPLNLDDLTSDICSPYPVSGISGDSDGNASTGDYSPFYLQEALSALQRYLPSNDADVDSDTEVLGRDSDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPEFRKGSCKKGDACEFAHGVFECWLHPSRYRTQPCKDGTSCRRRVCFFAHTPEQLRILPQQSPRSANSADSYDGSPLRQAVESSCAKTLPFMLSPLSVSPPASSPTESPPLSPMAQSLSRSPCSSSINEMVATLRNLQLGKGKSFSLSSSWNVPMGSPCFGSPRGSVLRPGFYSLPTTPTQAPTLAGGSYFDIWDLSCEEEPVMERVESGRNIRAKMFEKLSKENSLERSDPGSSGGAPDVGWVSELVK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1230 391 Gene3D - 137 199 - -
Prci14g1230 391 ProSiteProfiles Zinc finger C3H1-type profile. 137 163 IPR000571 GO:0046872
Prci14g1230 391 FunFam Zinc finger CCCH domain-containing protein 66 94 162 - -
Prci14g1230 391 MobiDBLite consensus disorder prediction 365 391 - -
Prci14g1230 391 PANTHER UNKEMPT FAMILY MEMBER 28 391 IPR045234 -
Prci14g1230 391 SMART c3hfinal6 171 194 IPR000571 GO:0046872
Prci14g1230 391 SMART c3hfinal6 136 162 IPR000571 GO:0046872
Prci14g1230 391 MobiDBLite consensus disorder prediction 240 264 - -
Prci14g1230 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1230 Prci-Chr14 13569937 13571540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1230 86 255 C2H2 Transcription Factor Family AT5G12850 54.118 1.19e-56 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Prci14g1230 zf-CCCH 4.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1230 - - qsa:O6P43_007837 627.861