Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1180 ATGGCAGCGGGAGGCTTCTCCTCAGACGTTCCCAGGTTGAAGAGGGAAGAATGTAAACGAACAAAGAACGATTCCAAGTTCTCTGATTGGAAGATTCTCATTGGCCCTTCAGATTGGGAGGATTATTCTAGAGGGAAAGAAGGGTCAGCTAGATACAGAATTCACAACCTCCCAGAAGAATCGAGCCCAGGAGTTTATGAGCTTGGTATTGCTGTGTCTCCCATTGGTTTAGGGCGTAACGTTCACAAGCTTCATCCTAACCGTATAGTTGGGGTTTACCTTGGAAAGGCTGACAATGTGAGAACGAGACTCCAACAGTATGGCCGAACTGGAGCTCATTTAAGCAAAAACTGCTTAACTTCTGATCCACACAACAATCCTGCTTCTATCCATAAAGGGCAGGGATTTTTTGAGGAAATATTTTCACAAGGTTATGCGATTAGCTATAGATGGGCTCCTATGCAAAACGTAGAAGACGCCAGGAAAACGGAATGTCAGTTTCTCTGGAGATATGATTATGCATGGAACGCGCGTAATAATGGAATCCGGCGCCCGGATGATATTCTTCAGGAGATTAATAAAGTTGTTTCAGGTCCTCCAACATTTTCAAGCATGACCAAGTTGCTTCAACCTTTCACCCAGAAGCAAGTGGGTATCCGAATCAAATCAAGCAGTATGCCTTGGCCAGATGGCAAATTACACGAAATAGACACAGGCAACTATAATTTCTTACCTGGAGTATTTAAATTTAGCAGATCAAATCCTAGGTTAGTTCAAGATGTCCCTGCTATCATTGAGGAGAATACTACTACAAGATTCTGTGGAGTGGTCTTGAGTGATGGTTCTGTTTGTAGAAGACCACCAGCTGAAAGAAGAATGAGGTGTGTAGAACACAAAGGAATGAGAATAAATGGGCCCGCTTCCAAAAGGACAGTGAAATCAGAGAATCTTCTGAGCCTTGAACCCAGTGTACAATTCCAACAAAAGAGCGAAGGCTATGTGAAACACCCTCAAAAAATTGCAGTTGAAGATCCTTTTTATGGAAGCATTGCAAATATATGTGGAATCATTTTGAATGATGGCACTCGCTGTAGAAGACCACCTGTTGAAGGGAGACAGAGATGTCATGAACACAAAGGGAAGAGGATCGACGTGTCTATGTACGCATCTGCAACAATTGTAAAGCCACAGTTTCTGCAAAACGTTGCATCAGAATCTGACTACGTGAAAATTCCTAAAAATTTCACAGTTGAGAGTTCTCTTGACCAGAGAATTACCAGTATATGTGGAATCATTTTGAAGAATGGCTCTCCTTGTAGAAGACCACCAGTTAGGGGGAGAAAGCGATGTCATGAGCACAAAGGGAACAGGATCGACGCGTCTACGTACACATCTGCAACAATTGTAAATTCACAATTTCTACAAAACGTTGCATCAGAATCTGACTACGTGAAAATTCCTAAAAAATTCACAGTTGAGAGTTATCTTGACCAGAGAATTACCAGTATATGTGGAATCATTTTGAAGAATGGCTCTCCTTGTAGAAGACCACCAGTTAAAGGGAGGAAAAGGTGCCTTGAGCATAAAGGGAAGAGAATCTAG 1602 0.422 MAAGGFSSDVPRLKREECKRTKNDSKFSDWKILIGPSDWEDYSRGKEGSARYRIHNLPEESSPGVYELGIAVSPIGLGRNVHKLHPNRIVGVYLGKADNVRTRLQQYGRTGAHLSKNCLTSDPHNNPASIHKGQGFFEEIFSQGYAISYRWAPMQNVEDARKTECQFLWRYDYAWNARNNGIRRPDDILQEINKVVSGPPTFSSMTKLLQPFTQKQVGIRIKSSSMPWPDGKLHEIDTGNYNFLPGVFKFSRSNPRLVQDVPAIIEENTTTRFCGVVLSDGSVCRRPPAERRMRCVEHKGMRINGPASKRTVKSENLLSLEPSVQFQQKSEGYVKHPQKIAVEDPFYGSIANICGIILNDGTRCRRPPVEGRQRCHEHKGKRIDVSMYASATIVKPQFLQNVASESDYVKIPKNFTVESSLDQRITSICGIILKNGSPCRRPPVRGRKRCHEHKGNRIDASTYTSATIVNSQFLQNVASESDYVKIPKKFTVESYLDQRITSICGIILKNGSPCRRPPVKGRKRCLEHKGKRI 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1180 533 Pfam GIY-YIG domain-containing protein 27 189 - -
Prci14g1180 533 MobiDBLite consensus disorder prediction 1 22 - -
Prci14g1180 533 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 417 473 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1180 Prci-Chr14 12150107 12153538 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1180 13 533 HRT Transcription Factor Family AT5G56780 37.429 9.75e-102 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Prci14g1180 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1180 - - pcin:129292928 1100.5