Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1052 ATGCTGTTGTGGCCTCGCACTCCAACCTTTAGGCGGTCTCTACGTTCTCTTTCCAACGCCCATCGGAATCCTCACCATTCATCCTTTTTCCACCTAAACCTTTCTTCTTCAATCCAACCTCAGGTTTCTGGCGTCTTGGACGACGATTGCGAAGGCTTCTTGCCATGGTTAGAGTGGAAAGCTGGCTCTGGGATTTCATCATCGCTTTCAATCGGGAAATCTTCGTATGGCAGGTCTCTGTTTGCCTCTAGGATTATACACCCTGGAGAATGCATTTTACAAGTTCCTTATGCCGTGCAAATAAGTGTGGATAATTTACTCCCAGAAATCAGATCTTTGATCAGCAATGAAGTTGGAAATATTTCAAAACTTGCTGCTGTTATTCTAGTTGAGCAGAAACTGGGTCGGGACTCCGAGTGGGACCCATATATCAGCTGTCTTCCTCAGCAAGGACAGCTGCATAATACAATTCCGTTTGCAGATTTCTTGAATCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATACTCAGAAGTTATAGCTGATCGTGGCTATGCTCCTGGTGAACAGGTATTAATAAGATATGGAAAATTTTCTAATACTACCTTGATGCTGGACTTTGGCTTTACACTTCCTTACAACAATTACGATGAGGTCCAGATCCAGCTTGAAATACCCAAGCATGATTCCCTGCATGACATGAAAATGGAACTCTTGAGGCGATATTTTGTGCGCTCTCCCAAAGACGTGAAAGGCTTAAGCAACTCTGTGAACTCTTTCATAGTCAAGGAAGTGATACCTACCAGTGCAAAAGGAAAGGGACTTCCACAATCTCTTCGTGCATTTGCTCGCGTCCTTTCTTGCACCTTTCCTCAGGAACTAAATGATTTGGCCATGGAGGCTGCACAAACTGATGGTAGGCTGGCCAGGCGGCCATTGTGCAACATCAACAAAGAGATTGAAGCACACCTGATCTTGTCTTCATTATTCACCAAATTAATTGCAGAGCGCTCTGAAGCTATTATGTCATTGGAATTTTCCAATGCTTCCATTTCTACAAAAGTTGATGTAAGAAGAACAATGGCTCGGGATCTCCTAGTTGGTGAGCTTCGCATCCTCAAATCTGCTTCTGCTTGGCTGGACAATTACTGTTTTTCTTTGTCTGGACAAGCTATTCATTGCTAG 1200 0.435 MLLWPRTPTFRRSLRSLSNAHRNPHHSSFFHLNLSSSIQPQVSGVLDDDCEGFLPWLEWKAGSGISSSLSIGKSSYGRSLFASRIIHPGECILQVPYAVQISVDNLLPEIRSLISNEVGNISKLAAVILVEQKLGRDSEWDPYISCLPQQGQLHNTIPFADFLNHDGVSEAIVMSDDDKQYSEVIADRGYAPGEQVLIRYGKFSNTTLMLDFGFTLPYNNYDEVQIQLEIPKHDSLHDMKMELLRRYFVRSPKDVKGLSNSVNSFIVKEVIPTSAKGKGLPQSLRAFARVLSCTFPQELNDLAMEAAQTDGRLARRPLCNINKEIEAHLILSSLFTKLIAERSEAIMSLEFSNASISTKVDVRRTMARDLLVGELRILKSASAWLDNYCFSLSGQAIHC 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1052 399 Gene3D set domain protein methyltransferase, domain 1 46 153 - -
Prci14g1052 399 Pfam SET domain 139 201 IPR001214 GO:0005515
Prci14g1052 399 Pfam Rubisco LSMT substrate-binding 232 378 IPR015353 -
Prci14g1052 399 ProSiteProfiles SET domain profile. 63 201 IPR001214 GO:0005515
Prci14g1052 399 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 157 337 - -
Prci14g1052 399 SUPERFAMILY SET domain 48 220 IPR046341 -
Prci14g1052 399 Gene3D - 217 388 IPR036464 -
Prci14g1052 399 Gene3D set domain protein methyltransferase, domain 1 154 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1052 Prci-Chr14 10027527 10051803 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci14g1052 Rubis-subs-bind 9.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1052 K19199 - gmx:100818002 340.887