Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1050 ATGCTGTTGTGGCCTCGCACTCCAACCTTTAGGCGGTCTCTACGTTCTCTTTCCAACGCCCATCGGAATCCTCACCATTCATCCTTTTTCCACCTAAACCTTTCTTCTTCAATCCAACCTCAGGTTTCTGGCGTCTTGGACGACGATTGCGAAGGCTTCTTGCCATGGTTAGAGTGGAAAGCTGGCTCTGGGATTTCATCATCGCTTTCAATCGGGAAATCTTCGTATGGCAGGTCTCTGTTTGCCTCTAGGATTATACACCCTGGAGAATGCATTTTACAAGTTCCTTATGCCGTGCAAATAAGTGTGGATAATTTACTCCCAGAAATCAGATCTTTGATCAGCAATGAAGTTGGAAATATTTCAAAACTTGCTGCTGTTATTCTAGTTGAGCAGAAACTGGGTCGGGACTCCGAGTGGGACCCATATATCAGCTGTCTTCCTCAGCAAGGACAGCTGCATAATACAATATTTTGGAGTGAAAGTGAATTGGACATGATTCGGATAAGCTCAGTGTATCAGGAAACTATCAATCAAAAGTCTCAAATTGAGAAGGACTTTTTGGCAATCAGACCAGTTTTCGAAAGCCTCCTTAAAAGTTTTGGAGAATTTACTTTCAGGGATTTCATGCACGCGTGCACGCTTGTTGGTTGTCGGGCATGGGGAAGCATGAAGGGCTTATCTCTGATTCCGTTTGCAGATTTCTTGAATCACGATGGAGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATACTCAGAAGTTATAGCTGATCGTGGCTATGCTCCTGGTGAACAGGTATTAATAAGATATGGAAAATTTTCTAATACTACCTTGATGCTGGACTTTGGCTTTACACTTCCTTACAACAATTACGATGAGGTCCAGATCCAGCTTGAAATACCCAAGCATGATTCCCTGCATGACATGAAAATGGAACTCTTGAGGCGATATTTTGTGCGCTCTCCCAAAGACGTGAAAGGCTTAAGCAACTCTGTGAACTCTTTCATAGTCAAGGAAGTGATACCTACCAGTGCAAAAGGAAAGGGACTTCCACAATCTCTTCGTGCATTTGCTCGCGTCCTTTCTTGCACCTTTCCTCAGGAACTAAATGATTTGGCCATGGAGGCTGCACAAACTGATGGTAGGCTGGCCAGGCGGCCATTGTGCAACATCAACAAAGAGATTGAAGCACACCTGATCTTGTCTTCATTATTCACCAAATTAATTGCAGAGCGCTCTGAAGCTATTATGTCATTGGAATTTTCCAATGCTTCCATTTCTACAAAAGTTGATGTAAGAAGAACAATGGCTCGGGATCTCCTAGTTGGTGAGCTTCGCATCCTCAAATCTGCTTCTGCTTGGCTGGACAATTACTGTTTTTCTTTGTCTGGACAAGCTATTCATTGCTAG 1419 0.432 MLLWPRTPTFRRSLRSLSNAHRNPHHSSFFHLNLSSSIQPQVSGVLDDDCEGFLPWLEWKAGSGISSSLSIGKSSYGRSLFASRIIHPGECILQVPYAVQISVDNLLPEIRSLISNEVGNISKLAAVILVEQKLGRDSEWDPYISCLPQQGQLHNTIFWSESELDMIRISSVYQETINQKSQIEKDFLAIRPVFESLLKSFGEFTFRDFMHACTLVGCRAWGSMKGLSLIPFADFLNHDGVSEAIVMSDDDKQYSEVIADRGYAPGEQVLIRYGKFSNTTLMLDFGFTLPYNNYDEVQIQLEIPKHDSLHDMKMELLRRYFVRSPKDVKGLSNSVNSFIVKEVIPTSAKGKGLPQSLRAFARVLSCTFPQELNDLAMEAAQTDGRLARRPLCNINKEIEAHLILSSLFTKLIAERSEAIMSLEFSNASISTKVDVRRTMARDLLVGELRILKSASAWLDNYCFSLSGQAIHC 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1050 472 Pfam Rubisco LSMT substrate-binding 305 451 IPR015353 -
Prci14g1050 472 Pfam SET domain 77 274 IPR001214 GO:0005515
Prci14g1050 472 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 287 - -
Prci14g1050 472 SUPERFAMILY SET domain 48 293 IPR046341 -
Prci14g1050 472 Gene3D - 290 461 IPR036464 -
Prci14g1050 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 48 410 - -
Prci14g1050 472 Gene3D set domain protein methyltransferase, domain 1 46 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1050 Prci-Chr14 10027526 10051803 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Prci14g1050 SET 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1050 K19199 - gmx:100818002 603.979