Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g1015 ATGGCGTCACTACTACCATACAGCGATGTTGATTTCAGCTTGAGAGCAATGGCGGGTCGTGCCGAGGGTTTCGGCCGCGACTCCATCGGTGGCCTCCACGGCCCTCTCTATTTTGTTACCACCCTCGCTGATGATGGACCCGGATCCCTTCGAGATGGATGTCGTAGAAAGGAGCCGCTCTGGATTGTTTTTGAAGTTTCGGGTACTATTCATCTATCATCATACCTGAGTGTATCATCTTATAAGACAATAGATGGCCGAGGCCAGAGCATAAAGCTCACAGGAAAGGGCTTGAGGCTGAAAGAATGTGAGCACATAATTGTATGCAACCTTCAGTTTGAAGGTGGCAGGGGTCATGATGTTGATGGCATTCAAATAAAACCAAATTCTAGGCACATATGGATAGATCGCTGCAGTCTTCGTGATTATGATGATGGACTCATAGACATTACAAGACAAAGCACAGATATTACTGTATCTAGATGTTACTTTGCACAGCATGATAAAACCATGCTAATTGGAGCTGACCCATCCCACATCGGCGATAGATGCATCCGTGTGACAATTCATCACTGCTTCTTCGATGGGACACGACAAAGGCAACCTCGTGTTAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGTATATACGCCGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTGAGTGCAACATTTATGAAGCGGGAACTAAGAAAAAGACTTTTGAATTCTATACAGAGAAGGTAGAATGCTGCGGACAAGGAGGAGCAGAAATCTGGCATCATAATATCTGA 813 0.449 MASLLPYSDVDFSLRAMAGRAEGFGRDSIGGLHGPLYFVTTLADDGPGSLRDGCRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQSIKLTGKGLRLKECEHIIVCNLQFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFAQHDKTMLIGADPSHIGDRCIRVTIHHCFFDGTRQRQPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSECNIYEAGTKKKTFEFYTEKVECCGQGGAEIWHHNI 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g1015 270 PANTHER PECTATE LYASE 18-RELATED 15 246 IPR045032 GO:0030570
Prci14g1015 270 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Prci14g1015 270 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Prci14g1015 270 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Prci14g1015 270 Pfam Pectate lyase 76 239 IPR002022 -
Prci14g1015 270 SUPERFAMILY Pectin lyase-like 18 250 IPR011050 -
Prci14g1015 270 SMART amb_all 47 245 IPR002022 -
Prci14g1015 270 Gene3D - 8 267 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g1015 Prci-Chr14 9409135 9412227 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g1015 42 255 Polysaccharide Lyase AT3G55140 88.785 8.63e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g1015 K01728 - gmx:100802068 495.352