Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0967 ATGGTTCTCTCCAAGAAGAAGCTTAAACAGAAGCTTAGAGCAGAGTTAGCTCCATCTCAGACCGACAATCCGGATTGCTCTTGCAAAAATCTTCTTGACTCTGCAACCCTGAAATTCCGATTATCAAAGAGAGAGAAGCGCAGAAAGGTTCGCTCTTTGCAACAACCCGAGACTACCCAAGGCGATGATGTTGATGGTCGTGGCGTTGATGAGAGTAAAGAAGTCGACGGAACAAAGAAGAAGAGCAAAAAGAGAAAGAGGAAGGCTGAGGACAACGATGTGGCAAATGGGGTTGTGAAGGATGGGAAGAAAACGAAGAAAAAACATGATAAGAAGAAGAAGAAAAGGAAGAAGAAGGCCAAGACGGACAAGGACAAGGATGCTAATCCTGGAGATGGAGGTGAGAAGTTGGAGGCTTCAAAGTTAACTAAGAGTAATGGCAGTGAACAAAATGACAATGTTCCCACAAAAGTATATGTTGGAGGAATTCCCTACTATTCAACCGAGGACGATATTCGAAGCTATTTTGAAGGCTGTGGCACAATAACTGAAATTGATTGCATGACGTTTCCTGAGACTGGCAAGTTTAGAGGGATTGCCCTGATCAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAACTCGAACTGTTAAAGCGTCCGATTTCACCCCAAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACCGAGGATCAATTAAGGACTCTATTCTCAAACTGCAGTGTATCATCCATACGTTTTGGTATGGACAAGGAGACAGGAGAATTCCGAGGGTATGCCCATGTGGATTTCACGGATAGTCAGTCGGTGAAAACAGCACTTGCCCTGGACCAAAAAGTGATGTGTGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAACAACCGATTCGCCTGCGAGCACCCAAGTTGATACTGAGAAGTCAGGTTCCACTGGAAGTGGCAAAATGAAGAGGAGGACGTGCTATGAGTGTGGTGAAAAGGGTCATATTTCTTCTGCATGCCCAAAGAAAGAGAATGTTGATTCAAATTCAGGCTAG 1161 0.441 MVLSKKKLKQKLRAELAPSQTDNPDCSCKNLLDSATLKFRLSKREKRRKVRSLQQPETTQGDDVDGRGVDESKEVDGTKKKSKKRKRKAEDNDVANGVVKDGKKTKKKHDKKKKKRKKKAKTDKDKDANPGDGGEKLEASKLTKSNGSEQNDNVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTVKASDFTPKPVEGYNRIYVGNLSWDITEDQLRTLFSNCSVSSIRFGMDKETGEFRGYAHVDFTDSQSVKTALALDQKVMCGRPVRITCAVPLKKPWKQTTDSPASTQVDTEKSGSTGSGKMKRRTCYECGEKGHISSACPKKENVDSNSG 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0967 386 Pfam Zinc knuckle 360 377 IPR001878 GO:0003676|GO:0008270
Prci14g0967 386 MobiDBLite consensus disorder prediction 63 78 - -
Prci14g0967 386 SUPERFAMILY Retrovirus zinc finger-like domains 349 381 IPR036875 GO:0003676|GO:0008270
Prci14g0967 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 156 233 IPR000504 GO:0003723
Prci14g0967 386 ProSiteProfiles Zinc finger CCHC-type profile. 362 377 IPR001878 GO:0003676|GO:0008270
Prci14g0967 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 158 224 IPR000504 GO:0003723
Prci14g0967 386 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 320 IPR000504 GO:0003723
Prci14g0967 386 MobiDBLite consensus disorder prediction 1 155 - -
Prci14g0967 386 MobiDBLite consensus disorder prediction 141 155 - -
Prci14g0967 386 MobiDBLite consensus disorder prediction 122 139 - -
Prci14g0967 386 MobiDBLite consensus disorder prediction 332 358 - -
Prci14g0967 386 SUPERFAMILY RNA-binding domain, RBD 244 331 IPR035979 GO:0003676
Prci14g0967 386 SMART rrm1_1 252 323 IPR000504 GO:0003723
Prci14g0967 386 SMART rrm1_1 157 229 IPR000504 GO:0003723
Prci14g0967 386 MobiDBLite consensus disorder prediction 87 103 - -
Prci14g0967 386 MobiDBLite consensus disorder prediction 334 351 - -
Prci14g0967 386 Gene3D - 240 333 IPR012677 -
Prci14g0967 386 MobiDBLite consensus disorder prediction 104 121 - -
Prci14g0967 386 Gene3D - 340 385 - -
Prci14g0967 386 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 101 232 - -
Prci14g0967 386 CDD RRM1_PHIP1 158 229 IPR034361 -
Prci14g0967 386 SUPERFAMILY RNA-binding domain, RBD 148 237 IPR035979 GO:0003676
Prci14g0967 386 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 327 IPR000504 GO:0003723
Prci14g0967 386 MobiDBLite consensus disorder prediction 16 30 - -
Prci14g0967 386 SMART c2hcfinal6 361 377 IPR001878 GO:0003676|GO:0008270
Prci14g0967 386 Gene3D - 38 239 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0967 Prci-Chr14 8722919 8726966 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0967 156 325 Eukaryotic Initiation Factors Gene Family AT3G16380 29.282 1.24e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0967 - - gmx:100814693 434.106