Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci14g0967 | ATGGTTCTCTCCAAGAAGAAGCTTAAACAGAAGCTTAGAGCAGAGTTAGCTCCATCTCAGACCGACAATCCGGATTGCTCTTGCAAAAATCTTCTTGACTCTGCAACCCTGAAATTCCGATTATCAAAGAGAGAGAAGCGCAGAAAGGTTCGCTCTTTGCAACAACCCGAGACTACCCAAGGCGATGATGTTGATGGTCGTGGCGTTGATGAGAGTAAAGAAGTCGACGGAACAAAGAAGAAGAGCAAAAAGAGAAAGAGGAAGGCTGAGGACAACGATGTGGCAAATGGGGTTGTGAAGGATGGGAAGAAAACGAAGAAAAAACATGATAAGAAGAAGAAGAAAAGGAAGAAGAAGGCCAAGACGGACAAGGACAAGGATGCTAATCCTGGAGATGGAGGTGAGAAGTTGGAGGCTTCAAAGTTAACTAAGAGTAATGGCAGTGAACAAAATGACAATGTTCCCACAAAAGTATATGTTGGAGGAATTCCCTACTATTCAACCGAGGACGATATTCGAAGCTATTTTGAAGGCTGTGGCACAATAACTGAAATTGATTGCATGACGTTTCCTGAGACTGGCAAGTTTAGAGGGATTGCCCTGATCAGTTTTAAGACTGAAGCTGCTGCAAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAACTCGAACTGTTAAAGCGTCCGATTTCACCCCAAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACCGAGGATCAATTAAGGACTCTATTCTCAAACTGCAGTGTATCATCCATACGTTTTGGTATGGACAAGGAGACAGGAGAATTCCGAGGGTATGCCCATGTGGATTTCACGGATAGTCAGTCGGTGAAAACAGCACTTGCCCTGGACCAAAAAGTGATGTGTGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAACAACCGATTCGCCTGCGAGCACCCAAGTTGATACTGAGAAGTCAGGTTCCACTGGAAGTGGCAAAATGAAGAGGAGGACGTGCTATGAGTGTGGTGAAAAGGGTCATATTTCTTCTGCATGCCCAAAGAAAGAGAATGTTGATTCAAATTCAGGCTAG | 1161 | 0.441 | MVLSKKKLKQKLRAELAPSQTDNPDCSCKNLLDSATLKFRLSKREKRRKVRSLQQPETTQGDDVDGRGVDESKEVDGTKKKSKKRKRKAEDNDVANGVVKDGKKTKKKHDKKKKKRKKKAKTDKDKDANPGDGGEKLEASKLTKSNGSEQNDNVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTVKASDFTPKPVEGYNRIYVGNLSWDITEDQLRTLFSNCSVSSIRFGMDKETGEFRGYAHVDFTDSQSVKTALALDQKVMCGRPVRITCAVPLKKPWKQTTDSPASTQVDTEKSGSTGSGKMKRRTCYECGEKGHISSACPKKENVDSNSG | 386 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci14g0967 | 386 | Pfam | Zinc knuckle | 360 | 377 | IPR001878 | GO:0003676|GO:0008270 | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 63 | 78 | - | - | |
Prci14g0967 | 386 | SUPERFAMILY | Retrovirus zinc finger-like domains | 349 | 381 | IPR036875 | GO:0003676|GO:0008270 | |
Prci14g0967 | 386 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 156 | 233 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | ProSiteProfiles | Zinc finger CCHC-type profile. | 362 | 377 | IPR001878 | GO:0003676|GO:0008270 | |
Prci14g0967 | 386 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 158 | 224 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 320 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 1 | 155 | - | - | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 141 | 155 | - | - | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 122 | 139 | - | - | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 332 | 358 | - | - | |
Prci14g0967 | 386 | SUPERFAMILY | RNA-binding domain, RBD | 244 | 331 | IPR035979 | GO:0003676 | |
Prci14g0967 | 386 | SMART | rrm1_1 | 252 | 323 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | SMART | rrm1_1 | 157 | 229 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 87 | 103 | - | - | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 334 | 351 | - | - | |
Prci14g0967 | 386 | Gene3D | - | 240 | 333 | IPR012677 | - | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 104 | 121 | - | - | |
Prci14g0967 | 386 | Gene3D | - | 340 | 385 | - | - | |
Prci14g0967 | 386 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 101 | 232 | - | - | |
Prci14g0967 | 386 | CDD | RRM1_PHIP1 | 158 | 229 | IPR034361 | - | |
Prci14g0967 | 386 | SUPERFAMILY | RNA-binding domain, RBD | 148 | 237 | IPR035979 | GO:0003676 | |
Prci14g0967 | 386 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 327 | IPR000504 | GO:0003723 | |
Prci14g0967 | 386 | MobiDBLite | consensus disorder prediction | 16 | 30 | - | - | |
Prci14g0967 | 386 | SMART | c2hcfinal6 | 361 | 377 | IPR001878 | GO:0003676|GO:0008270 | |
Prci14g0967 | 386 | Gene3D | - | 38 | 239 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci14g0967 | Prci-Chr14 | 8722919 | 8726966 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci14g0967 | 156 | 325 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 29.282 | 1.24e-07 | 51.6 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci14g0967 | - | - | gmx:100814693 | 434.106 |