Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0960 ATGAAGAGGGAGAGAGATAATCAGGTCCTTGATCATAGCATCGCCATGGCCAACTGTTTGATGTTGCTTTCTCGTGGATGCCAATTTGACCAGCCGATCATCGCCGCCGCCTCACACGGCAACAATAGCCACCGCGTGTTCGAGTGCAAGACATGTAACCGGCAGTTCCCGTCGTTTCAGGCGCTGGGCGGCCACCGGGCGAGCCACAAGAAGCCGCGGCCGGCGGCCGGCGATGAGATGAACGAGCTTCATGGTGTAATTAAGCCTAAAACTCATGAGTGCTCCATCTGTGGAGTGGAGTTTGCAATAGGGCAAGCTTTAGGGGGTCACATGAGAAGGCACAGAGCTGCTGCAACAACTTTGAAGAATGATGATAATAATACTCAGAACAAAACGACGACGTTGAGTAGCAGTAGTGATGATGGTAGTTGTCTTGATTCTGATCATCAGGTTCATAGTTATGAGGGAAATAGAAAAAGAGTTTTGCTTTTGGATCTGAACTTGACACCTTCGGAGAATGATTTGGATTTTCTCAACTTCGTTTGA 546 0.4872 MKRERDNQVLDHSIAMANCLMLLSRGCQFDQPIIAAASHGNNSHRVFECKTCNRQFPSFQALGGHRASHKKPRPAAGDEMNELHGVIKPKTHECSICGVEFAIGQALGGHMRRHRAAATTLKNDDNNTQNKTTTLSSSSDDGSCLDSDHQVHSYEGNRKRVLLLDLNLTPSENDLDFLNFV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0960 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Prci14g0960 181 MobiDBLite consensus disorder prediction 119 147 - -
Prci14g0960 181 MobiDBLite consensus disorder prediction 121 144 - -
Prci14g0960 181 Pfam C2H2-type zinc finger 46 72 - -
Prci14g0960 181 Pfam C2H2-type zinc finger 92 116 - -
Prci14g0960 181 Gene3D Classic Zinc Finger 45 114 - -
Prci14g0960 181 PANTHER ZINC FINGER PROTEIN ZAT5 10 173 - -
Prci14g0960 181 SMART c2h2final6 92 114 IPR013087 -
Prci14g0960 181 SMART c2h2final6 47 69 IPR013087 -
Prci14g0960 181 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Prci14g0960 181 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Prci14g0960 181 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Prci14g0960 181 SUPERFAMILY beta-beta-alpha zinc fingers 45 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0960 Prci-Chr14 8694494 8695351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0960 1 181 C2H2 Transcription Factor Family AT2G28710 42.391 6.73e-36 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci14g0960 zf-C2H2_6 3.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0960 - - gmx:100781134 184.111