Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0724 ATGGAAGACGGTGGTTGTAATGGGAGTTCATGTGTGATGGGTTTTGGAGAGAACAGTAACAATAGTAGTGGTGGTGGGTTGTGTGCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCAGTCCTAATCCTATGAATAATGCTCCTCCCACACAAAGTACTCCTTTGTTTCCTTTGCCTTCTTGCACTAACACTCCTACTACTTCCAATCATCATCCCCAAAACCACCACCACACCACCACCACCAACACTACTTCTTCTGGTTCTGGGTTAGCCTCCTTTTTCATGGACGCCAACAACAGCAACAACAACGCTAGCTCTTCTTCTTCTGCCAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCAGCCTACGTTAATTGTCAAAAGGTCGGAGCTCCGCCGGAAGCGGTGGCGAGGTTAGAGGAAGCATGTGCGTCTGCTTTGACAATGGCCGCCGCTGGTGGGTCGGGGTGTATCGGAGAAGATCCGGCACTGGATCAGTTTATGGAGGCGTATTGTGAGATGCTGACCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCTATGCACTTTCTTCACACCATCGAGTCTCAGTTCAAAGCTCTCACTATTTCTTCCTCGTCAGATTTCGCATGTGGAGAGGCTAGTGATCGGAATGGATCATCAGAAGAAGACATGGATGTGCCGAAGAATCTGATCGATCCACTGGCGGACGACCAAGAGTTGAAGGGCCAACTTCTGCGGAAATACAGCGGATACTTGGGCAGTCTGAAGCAGGAATTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCTAAAGAAGCAAGACAACAGCTTCTTGATTGGTGGAGCAGACACTATAAATGGCCTTACCCATCTGAGTCACAGAAGCTGGCACTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAACTGGTTCATAAATCAGAGAAAGCGTCATTGGAAACCTTCAGAGGATATGCAGTTCATGGTGGTCGATCCTTCTCATCCTCACCACCACTATTACATGGACACTGTTCTTGGCAATCCCTATCCTATGATCTAA 1125 0.4684 MEDGGCNGSSCVMGFGENSNNSSGGGLCASSHPMMMMMPFVTTCHNVSHQIPFSPNPMNNAPPTQSTPLFPLPSCTNTPTTSNHHPQNHHHTTTTNTTSSGSGLASFFMDANNSNNNASSSSSAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMAAAGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFKEAMHFLHTIESQFKALTISSSSDFACGEASDRNGSSEEDMDVPKNLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0724 374 FunFam Homeobox protein knotted-1-like 2 285 347 - -
Prci14g0724 374 SMART KNOX1_2 122 166 IPR005540 GO:0003677|GO:0005634
Prci14g0724 374 Gene3D - 285 347 - -
Prci14g0724 374 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Prci14g0724 374 SMART ELK_2 260 281 IPR005539 GO:0003677
Prci14g0724 374 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Prci14g0724 374 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 349 - -
Prci14g0724 374 CDD homeodomain 292 344 IPR001356 GO:0003677
Prci14g0724 374 MobiDBLite consensus disorder prediction 70 101 - -
Prci14g0724 374 Pfam KNOX1 domain 125 162 IPR005540 GO:0003677|GO:0005634
Prci14g0724 374 SUPERFAMILY Homeodomain-like 282 359 IPR009057 -
Prci14g0724 374 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Prci14g0724 374 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Prci14g0724 374 MobiDBLite consensus disorder prediction 55 101 - -
Prci14g0724 374 Pfam ELK domain 260 281 IPR005539 GO:0003677
Prci14g0724 374 Pfam KNOX2 domain 175 222 IPR005541 GO:0003677|GO:0005634
Prci14g0724 374 SMART KNOX2_2 172 223 IPR005541 GO:0003677|GO:0005634
Prci14g0724 374 SMART HOX_1 282 347 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0724 Prci-Chr14 6014671 6019815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0724 124 373 Homeobox Transcription Factor Family AT1G62360 80.000 1.94e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Prci14g0724 KNOX2 5.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0724 - - qsa:O6P43_031286 479.559