Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0720 ATGGCGAAAACTAGACCCGGCAGGAGAGACCTCGATTCTTACACTATCAGAGGCACCAACAAGGTCGTTAGAGCTGGAGACACTGTGTTAATGCGACCTTCCGACACCAGCAAGCCTCCGTACGTGGCGCGAGTGGAGAAGATCGAACAGGACAATAGGAGCAACGTTAAAGTCCGTGTCAGGTGGTATTATCGGCCGGAAGAGTCTATTGGGGGACGCAGGCAATTCCATGGAGCTAAAGAGCTGTTTTTGTCGGACCATTATGATGTTCAGAGCGCTCACACCATTGAAGGCAAGTGTATCGTGCACTCTTTCAAGAACTACACCAAGCTCGAAAATGTAGGGGCTGAAGATTACTATTGTAGATTCGAATACAAGGCTGCTACTGGGGCTTTCACACCTGACCGTGTAGCTGTGTATTGCAAATGCGAAATGCCTTATAACCCAGATGACCTCATGGTGCAATGCGAGGGGTGCAAAGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAACTGGACCATTTTATGTGTTCTGAATGTTCATCTGATGACGACATGAAAAAGATGCCCCAAGCTACATATTCTGCATCTCCAGCTGATGATGGCAAGGCCCACTGCATCAACATTGTGCAGCACTGA 657 0.481 MAKTRPGRRDLDSYTIRGTNKVVRAGDTVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFMCSECSSDDDMKKMPQATYSASPADDGKAHCINIVQH 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0720 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Prci14g0720 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 205 - -
Prci14g0720 218 SUPERFAMILY FYVE/PHD zinc finger 132 193 IPR011011 -
Prci14g0720 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Prci14g0720 218 Pfam PHD-finger 140 188 IPR019787 -
Prci14g0720 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Prci14g0720 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Prci14g0720 218 Gene3D - 3 132 IPR043151 -
Prci14g0720 218 SMART PHD_3 140 187 IPR001965 -
Prci14g0720 218 CDD BAH_BAHCC1 22 156 - -
Prci14g0720 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 203 IPR013083 -
Prci14g0720 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Prci14g0720 218 PANTHER OS08G0421900 PROTEIN 1 208 - -
Prci14g0720 218 FunFam Chromatin remodeling protein EBS 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0720 Prci-Chr14 5997641 6002484 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0720 31 138 Core DNA Replication Machinery Family AT4G14700 30.275 6.97e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci14g0720 BAH 3.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0720 K25868 - gmx:100800993 422.165