Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0717 ATGGCGAAAACTAGACCCGGCAGGAGAGACCTCGATTCTTACACTATCAGAGGCACCAACAAGGTCGTTAGAGCGAGCGAAGTGGGGTGTTTGAAAAACTTGTGCTTTTGTGGTGGATTTGCAGCTGGAGACACTGTGTTAATGCGACCTTCCGACACCAGCAAGCCTCCGTACGTGGCGCGAGTGGAGAAGATCGAACAGGACAATAGGAGCAACGTTAAAGTCCGTGTCAGGTGGTATTATCGGCCGGAAGAGTCTATTGGGGGACGCAGGCAATTCCATGGAGCTAAAGAGCTGTTTTTGTCGGACCATTATGATGTTCAGAGCGCTCACACCATTGAAGGCAAGTGTATCGTGCACTCTTTCAAGAACTACACCAAGCTCGAAAATGTAGGGGCTGAAGATTACTATTGTAGATTCGAATACAAGGCTGCTACTGGGGCTTTCACACCTGACCGTGTAGCTGTGTATTGCAAATGCGAAATGCCTTATAACCCAGATGACCTCATGGTGCAATGCGAGGGGTGCAAAGATTGGTACCATCCTGCTTGTGTGGGCATGACTATTGAAGAAGCAAAGAAACTGGACCATTTTATGTGTTCTGAATGTTCATCTGATGACGACATGAAAAAGATGCCCCAAGCTACATATTCTGCATCTCCAGCTGATGATGGCAAGGCCCACTGCATCAACATTGTGCAGCACTGA 708 0.4802 MAKTRPGRRDLDSYTIRGTNKVVRASEVGCLKNLCFCGGFAAGDTVLMRPSDTSKPPYVARVEKIEQDNRSNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCIVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFMCSECSSDDDMKKMPQATYSASPADDGKAHCINIVQH 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0717 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 220 IPR013083 -
Prci14g0717 235 SMART BAH_4 38 153 IPR001025 GO:0003682
Prci14g0717 235 FunFam Chromatin remodeling protein EBS 1 149 - -
Prci14g0717 235 CDD BAH_BAHCC1 43 173 - -
Prci14g0717 235 ProSiteProfiles BAH domain profile. 38 153 IPR001025 GO:0003682
Prci14g0717 235 Pfam BAH domain 41 152 IPR001025 GO:0003682
Prci14g0717 235 SMART PHD_3 157 204 IPR001965 -
Prci14g0717 235 Gene3D - 39 149 IPR043151 -
Prci14g0717 235 SUPERFAMILY FYVE/PHD zinc finger 149 210 IPR011011 -
Prci14g0717 235 ProSitePatterns Zinc finger PHD-type signature. 158 203 IPR019786 -
Prci14g0717 235 ProSiteProfiles Zinc finger PHD-type profile. 155 206 IPR019787 -
Prci14g0717 235 PANTHER OS08G0421900 PROTEIN 1 225 - -
Prci14g0717 235 FunFam Bromo-adjacent homology (BAH) domain-containing protein 150 222 - -
Prci14g0717 235 Pfam PHD-finger 157 205 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0717 Prci-Chr14 5997641 6002487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0717 36 155 Core DNA Replication Machinery Family AT4G14700 28.058 6.97e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Prci14g0717 BAH 6.1e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0717 K25868 - gmx:100800993 411.379