Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0634 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAGCAACCCACCCAGCAATACCAGCAGCAGCAACCCTACATGATGATGCCACCGCAGGCTCAGGCACCGCCTATGTGGGCTCCTTCTGCCCAGCCCCCGCCGCCGCAGCAGGCGGTTGCTCCGCCGCAACCCACCCAACACGTCCAGCCTAGCAGCGCCGATGAGGTCCGTACCCTTTGGATCGGTGATTTGCAGTACTGGATGGATGAGAGCTATCTCTATACTTGTTTTGCGCATACCGGTGAGGTGGCTTCTGTGAAAGTCATTCGGAATAAGCAAACTAATGCGTCGGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCTGCTGCTGAGAGAATTCTTCAATCATATAATGGCACAATTATGCCTAACGGTGGGCAAAACTTTAGATTAAATTGGGCTACTTTTAGTTCGGGCGATAGGCGTCATGATGATTCTCCAGATTACACAATTTTTGTGGGGGACTTGGCTGCCGATGTCACAGATTACATGCTGCAGGAGACATTTCGGGCCAGATATCCCTCAGTTAAGGGCGCAAAAGTGGTAATTGATAGGCTCACTGGGCGGACTAAGGGTTATGGTTTTGTCAAGTTTGGGGATGAGAATGAACAGATACAAGCTATGAGTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCGGCCACAAACAAAAACCTTGGGGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAACACAACTATTTTTGTCGGCAATTTGGATCCTAATGTTACAGATGATCATTTGAGGCAAGTTTTTGGCAATTATGGAGAATTAATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTTGCTGACAGGAGCTGTGCCGAAGAAGCTCTGCGGATGCTAAATGGTACGGTGTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGCAGTCCTTCGAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGGGGGTATTACGGGTATGCTCAAGGGTATGAGAATTATGGATACCCTCCTGCTGCTACACAGGATCCCAACATGTATGGAAGCTATCCAGGGTATGCTAATTATCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA 1206 0.4867 MMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPPQPTQHVQPSSADEVRTLWIGDLQYWMDESYLYTCFAHTGEVASVKVIRNKQTNASEGYGFIEFFTRAAAERILQSYNGTIMPNGGQNFRLNWATFSSGDRRHDDSPDYTIFVGDLAADVTDYMLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMSEMQGVLCSTRPMRIGPATNKNLGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGNYGELIHVKIPAGKRCGFVQFADRSCAEEALRMLNGTVLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0634 401 Gene3D - 8 161 IPR012677 -
Prci14g0634 401 SMART rrm1_1 165 239 IPR000504 GO:0003723
Prci14g0634 401 SMART rrm1_1 270 337 IPR000504 GO:0003723
Prci14g0634 401 SMART rrm1_1 72 147 IPR000504 GO:0003723
Prci14g0634 401 MobiDBLite consensus disorder prediction 387 401 - -
Prci14g0634 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Prci14g0634 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Prci14g0634 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Prci14g0634 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Prci14g0634 401 CDD RRM1_SECp43_like 72 152 - -
Prci14g0634 401 CDD RRM2_SECp43_like 163 242 - -
Prci14g0634 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Prci14g0634 401 MobiDBLite consensus disorder prediction 12 30 - -
Prci14g0634 401 MobiDBLite consensus disorder prediction 1 66 - -
Prci14g0634 401 MobiDBLite consensus disorder prediction 31 55 - -
Prci14g0634 401 MobiDBLite consensus disorder prediction 239 269 - -
Prci14g0634 401 MobiDBLite consensus disorder prediction 380 401 - -
Prci14g0634 401 SUPERFAMILY RNA-binding domain, RBD 254 367 IPR035979 GO:0003676
Prci14g0634 401 Gene3D - 163 239 IPR012677 -
Prci14g0634 401 SUPERFAMILY RNA-binding domain, RBD 150 260 IPR035979 GO:0003676
Prci14g0634 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 354 - -
Prci14g0634 401 FunFam Polyadenylate-binding protein RBP45C 156 247 - -
Prci14g0634 401 FunFam Polyadenylate-binding protein RBP45C 248 351 - -
Prci14g0634 401 FunFam Polyadenylate-binding protein RBP45 10 155 - -
Prci14g0634 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Prci14g0634 401 Gene3D - 246 350 IPR012677 -
Prci14g0634 401 MobiDBLite consensus disorder prediction 243 269 - -
Prci14g0634 401 SUPERFAMILY RNA-binding domain, RBD 46 150 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0634 Prci-Chr14 5405194 5409283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0634 268 347 Eukaryotic Initiation Factors Gene Family AT4G34110 33.333 4.89e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0634 - - gmx:100796848 595.119