Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0580 ATGGCAGACCAGCCAGTTCCGCCGAAGAAGACGAAGGGCCAGCAGAAAGTCGAAATCAAAATGGTGGAAGACGCTAAAAGGCGTAGTGTCACATTCACAAAACGCAAAGCTGGGCTTTTTAAGAAGGCCGACCAGCTCTGTACTCTCACTGGCGCTGAGGTCGCTCTCATGGTGTTCTCTCCCGGAGGCAAGCCTTACACGTTCGGCAGTCCCGACGTGAACACCGTGATACAGAGATACAAGAGTCAGGTTCGGCCATCGCCGAGGATGGAGCAACTGCAAGCCGAGCTTAATGAAATCTTGGAACAGTTGGCTTATGAGGATAAGCGAGCCGAGGAGCTGAAGGAGAACAAGAAACAATTGCTGGAACAAACGTGGATGGCTGCACCAATGGATACATTGTCTAGGGCTCAAAAACAGTGTATGCAGGAGCGACTAGTGCAACTGAACAAAGTACTCTCTCAACTTCCTCCTGGCTTATTAAACTTGCATGGATTATTGGCGGCACCTCCTCAGAATTCGGCGTCCGAGTTTCAGAGTAGTTCCTTGACTGCGTTGTTGACTCAGACTCCGGAGCTCCAAGGAAGTTCGGTGCTATCACGTGGAACCTCCACGGCACCGGTGACTGGAAGTCAGAATTTTACAGGAAACATGATGATTACACCCTCTGGTAACTTCTACACAGGTGAGTCGTCATCGGCGGTGCCTGCGGGAACTCAGAATCATGTGTTTAACATGATTCTGAACGGCCATGACAACTTCCGCGAGGGCGAATCCTCATCAATGGTGCCAGCTGAGAGTCATAATAACATGTTTGAGGAAAATGGCATGCTGAACAGCTATGGAAACTTCAACCCAGACGAACCGTCGGCACCATTGCCGGCAGAGAGTCAGAATCACATGTTTGACGAAAACATGATGCTGAACGTCGATGACTACCTAGGCGAATCGTCGTCAATGGTACCGGCAGAGACTCGGCATCATATGCTTGAGGATAACATGATGATGCCGGGGGACAGCAATGATAACTTATACATAGACGAATCATCGTCAATGGTGCCTATGTTCGAGGATAACATGATACTGAACAGTCAAGAGGACTTCTACACAGGTGGATCCTCATCAATGGCGTCAGAAGCTCAGATCATAATGTTTGGCGATAACATGATGCAAGCAGCCAATGACAACTTCTTGACAAGCGGATCCTTATTAACTGCAGATATGACTGGTCACCAGAATCAATTTTATGATGAAAACATTATGATTCCTCAACATGACAACTTCAATGCTCGTGGATCATCGATCGCAGTGCCACCAGCTGATGGGAATCAAATTTTTGATGAAAACATCATGGTTCCTCCACATGATGATAACTACTACATATGTGAATCTTCGTTGGTGCCGACAACTTATGAGAGTCTGGATTTTGATGAAAACATGAGGTGGTTGCTAGATGATCAATTCTATGGAAGCAGTTCCTCTATGGCGCTGCCAGAGCAAGGTCAAATGTTTGATGGAAATGTGATTCCGCCGCCGCCGCCTCCTCCTTATGATGGATATGGTGCTGGACCTTCAGGGTTCAACTGA 1587 0.4764 MADQPVPPKKTKGQQKVEIKMVEDAKRRSVTFTKRKAGLFKKADQLCTLTGAEVALMVFSPGGKPYTFGSPDVNTVIQRYKSQVRPSPRMEQLQAELNEILEQLAYEDKRAEELKENKKQLLEQTWMAAPMDTLSRAQKQCMQERLVQLNKVLSQLPPGLLNLHGLLAAPPQNSASEFQSSSLTALLTQTPELQGSSVLSRGTSTAPVTGSQNFTGNMMITPSGNFYTGESSSAVPAGTQNHVFNMILNGHDNFREGESSSMVPAESHNNMFEENGMLNSYGNFNPDEPSAPLPAESQNHMFDENMMLNVDDYLGESSSMVPAETRHHMLEDNMMMPGDSNDNLYIDESSSMVPMFEDNMILNSQEDFYTGGSSSMASEAQIIMFGDNMMQAANDNFLTSGSLLTADMTGHQNQFYDENIMIPQHDNFNARGSSIAVPPADGNQIFDENIMVPPHDDNYYICESSLVPTTYESLDFDENMRWLLDDQFYGSSSSMALPEQGQMFDGNVIPPPPPPPYDGYGAGPSGFN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0580 528 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Prci14g0580 528 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Prci14g0580 528 Coils Coil 90 124 - -
Prci14g0580 528 FunFam Agamous-like MADS-box protein AGL62 24 90 - -
Prci14g0580 528 CDD MADS_MEF2_like 13 81 IPR033896 GO:0000977|GO:0045944
Prci14g0580 528 MobiDBLite consensus disorder prediction 194 215 - -
Prci14g0580 528 PANTHER MADS BOX PROTEIN 15 148 - -
Prci14g0580 528 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Prci14g0580 528 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Prci14g0580 528 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Prci14g0580 528 Gene3D - 25 94 IPR036879 GO:0003677|GO:0046983
Prci14g0580 528 SUPERFAMILY SRF-like 13 88 IPR036879 GO:0003677|GO:0046983
Prci14g0580 528 MobiDBLite consensus disorder prediction 503 528 - -
Prci14g0580 528 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0580 Prci-Chr14 4696285 4697871 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0580 9 154 Type I MADS-box Gene Family AT5G60440 38.272 1.53e-28 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci14g0580 SRF-TF 4.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0580 - - pcin:129293116 1031.94