Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci14g0577 | ATGTCGTCGTCGTCGACCACAAATGCAGGGAGGAGGAGAAGGAGCAAAGGTCGCCAGAGGATTGAGATAAAGAAGATGGAGAACGAAAGCAACCTGCAAGTGACCTTCTCGAAGCGTCGAGCTGGTCTCTTCAAGAAGGCCAGTGAGCTTTGCACTCTCTGCGGCGTCGAGGTTGCCCTAATCGTCTTCTCTCCCGGCGACAAGGCCTTCTCGTTTGGCCATCCGAGTGTCGATGCTGTTCTGGACCGTTTCCTGAACGGTGGCGTGCCACCACAACCTCCATCAGCTCCTATGCAAATGATGGAGGTTCACCGGAACGCCGCCGTCCAGGAGCTTAACTCTCAGCTCACTCAGGTTATGGAAGAGCTTGAGGTGGAAAAGAAGCGCGGGGAAGAACTCAACAGGAGGATGAAGGAGATGGAGAACAAGTTCTGGTGGGCTAAACCAGTTAATACGCTCAATAAAGATCAGCTTGTGACCTTGAAGGCAAGTCTGGAGGAGATGAAGAAGACTTTCTGGCGTCGAGCTGATAATGCTTTTTTCCACATGGCTTCAAATGCTAATAAACCGTTTCAGTTCCATGTTGGCAGCTCTTCCTCCGGCCGCCAGCTAACTCCACCGCCTCAGCCGCCACCAATGCAGATGGCAGCGTCTCCTGCAGCTCAGGTGTTTCCGACCCCTTTCGAGCAGACAGTACTCCCGCAGCAACCTCCGATGCCACTACCTCATCAGATGATTCAGAATCCGATGTTCGAAGGAAACATGATGCTCTCGCCGCCGCCGCCGCCACCACCACCGGCAACCCAAGGATTCCGGCAATATCAGAACATGGGAGAACACAGCGGATCAGGATACTACTGA | 861 | 0.5366 | MSSSSTTNAGRRRRSKGRQRIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVEVALIVFSPGDKAFSFGHPSVDAVLDRFLNGGVPPQPPSAPMQMMEVHRNAAVQELNSQLTQVMEELEVEKKRGEELNRRMKEMENKFWWAKPVNTLNKDQLVTLKASLEEMKKTFWRRADNAFFHMASNANKPFQFHVGSSSSGRQLTPPPQPPPMQMAASPAAQVFPTPFEQTVLPQQPPMPLPHQMIQNPMFEGNMMLSPPPPPPPPATQGFRQYQNMGEHSGSGYY | 286 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci14g0577 | 286 | MobiDBLite | consensus disorder prediction | 270 | 286 | - | - | |
| Prci14g0577 | 286 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 25 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | FunFam | Agamous-like MADS-box protein AGL62 | 28 | 93 | - | - | |
| Prci14g0577 | 286 | Gene3D | - | 96 | 176 | - | - | |
| Prci14g0577 | 286 | ProSiteProfiles | MADS-box domain profile. | 16 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | MobiDBLite | consensus disorder prediction | 194 | 218 | - | - | |
| Prci14g0577 | 286 | CDD | MADS_MEF2_like | 21 | 87 | IPR033896 | GO:0000977|GO:0045944 | |
| Prci14g0577 | 286 | PANTHER | MADS BOX PROTEIN | 18 | 172 | - | - | |
| Prci14g0577 | 286 | MobiDBLite | consensus disorder prediction | 257 | 286 | - | - | |
| Prci14g0577 | 286 | Gene3D | - | 28 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | PRINTS | MADS domain signature | 18 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | PRINTS | MADS domain signature | 38 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | PRINTS | MADS domain signature | 53 | 74 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | Coils | Coil | 106 | 143 | - | - | |
| Prci14g0577 | 286 | SMART | madsneu2 | 16 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
| Prci14g0577 | 286 | SUPERFAMILY | SRF-like | 17 | 87 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci14g0577 | Prci-Chr14 | 4670392 | 4671252 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci14g0577 | 13 | 200 | Type I MADS-box Gene Family | AT5G60440 | 54.450 | 1.80e-61 | 195 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MADS-M-type | Prci14g0577 | SRF-TF | 5.6e-25 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci14g0577 | - | - | pcin:129293114 | 523.087 |