Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0417 ATGTCTGCAGATAGAGAACCAGAGAGGGAAAACCAGTCCAATGATTCAGATAATTCTGACATGGAGAAGAACATGCCCATAAACCCACCTGAAAACAATTCCAATTCTAATGGCCCTTCACCGACAAGAGGGAAGGAGAAGTGTGTTATTAGTAGTAGTGACGAAACTGATGATGATACTGCTGAGAGAGAGAAGCGTAAGAAGATAAACGATTTATTTGGTAGCCTTCAAGCTATGCTTCCGCATGTTCCTTCGCAGGCGGATAAAATAACAGTAGTGGATGAAACATTGAACTACATAACAACATTAGAGAAAACTTTGGAAAACCTGCAAAAGACGAAGATGCAACGACTTCTTCGATCGTCAGTCTCTAATGTTGGGCATCCCAGTGTGTGCTCTTCCAAGAAGTGGCGCCTTTTCACCACAATCTGTTATGTTCTGGAGAAGTACAAGATTGAAGTTCTGTTTGCCCACATTACATGTGACAATAATGGTCGAAGGTTCTATATGTTTGAAGCACAAGTGAACAGAGATTCGGATCAGCTTCCTGGGGCATTATCAGCAGAGGAAACATTCAAGCAAGCTGCTGAAGAAATTATTCTGTGTCTTGCCTTGTTAATTTGA 624 0.4151 MSADREPERENQSNDSDNSDMEKNMPINPPENNSNSNGPSPTRGKEKCVISSSDETDDDTAEREKRKKINDLFGSLQAMLPHVPSQADKITVVDETLNYITTLEKTLENLQKTKMQRLLRSSVSNVGHPSVCSSKKWRLFTTICYVLEKYKIEVLFAHITCDNNGRRFYMFEAQVNRDSDQLPGALSAEETFKQAAEEIILCLALLI 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0417 207 Coils Coil 93 113 - -
Prci14g0417 207 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 61 115 IPR036638 GO:0046983
Prci14g0417 207 CDD bHLH_AtbHLH_like 61 111 IPR045239 -
Prci14g0417 207 SMART finulus 61 109 IPR011598 GO:0046983
Prci14g0417 207 MobiDBLite consensus disorder prediction 18 42 - -
Prci14g0417 207 MobiDBLite consensus disorder prediction 1 17 - -
Prci14g0417 207 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 53 103 IPR011598 GO:0046983
Prci14g0417 207 MobiDBLite consensus disorder prediction 1 64 - -
Prci14g0417 207 Pfam Helix-loop-helix DNA-binding domain 61 103 IPR011598 GO:0046983
Prci14g0417 207 MobiDBLite consensus disorder prediction 48 64 - -
Prci14g0417 207 Gene3D - 56 125 IPR036638 GO:0046983
Prci14g0417 207 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 6 121 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0417 Prci-Chr14 3194773 3196060 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0417 139 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 40.000 6.09e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci14g0417 HLH 5.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0417 - - pcin:129293084 361.688