Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0416 ATGTCTGATCATCAAGAGGAGCAAACTCTATCTAATTCAGATAACAGTGGCGAAATTAGTACAGCAGATAGATCATTGAGAGGGAAGAGAGCTATTAACACAGTTGATGGTGGAGAAGATCATCGTGATCATCAATCTCATGCCTCATCAGAGAGAGAACGAAGGAAGAGGATGAGGCTTTATCTCAGAGAACTTCAAACTCTGGTCCCTTCTGTTCATCATGTCAAGGCAGACAAGGCAACCATTGTTGAAGAAACGATGAAGTACATCAAAACCCTAGAAGATACTCTTGAAAATTTGGAAAAGCTGAAGAGAGAGAGACTCCGATTATCTGCATCCAATTTGGCTTTTTATTATCCCACTGGTAATGTTGCTAGTGGCGCCTTCACAACAGCTCGCCTGCAGGGATCTTCTTCCTGCACAGCCAATCCAAATCCAATAGGGCTTCGAACTTGGATTTTCCCAAACGTGGTAGTGAACATTTGCGGTGAAGATGCTCAGTTTAGCATGTGCTTTCCCAATAAGGAAGGCCTTTACAGTGCCATTTATTATGCTCTTCAGAAGCACAATATTCAGGTTTTGTCTGCCAACATCTCATCTGATGATTATAACAGCTCCTATAAGATTCAAGCTCGTCTTTTGAAGGCAAATAATTCAGCTGGGGCATTATTTTCAGTGGAGGAAACATTCAAAGAAGCGGCAAGAGACATATATCTTCTCTCTCCAGTATGA 732 0.418 MSDHQEEQTLSNSDNSGEISTADRSLRGKRAINTVDGGEDHRDHQSHASSERERRKRMRLYLRELQTLVPSVHHVKADKATIVEETMKYIKTLEDTLENLEKLKRERLRLSASNLAFYYPTGNVASGAFTTARLQGSSSCTANPNPIGLRTWIFPNVVVNICGEDAQFSMCFPNKEGLYSAIYYALQKHNIQVLSANISSDDYNSSYKIQARLLKANNSAGALFSVEETFKEAARDIYLLSPV 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0416 243 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Prci14g0416 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 109 IPR036638 GO:0046983
Prci14g0416 243 MobiDBLite consensus disorder prediction 23 55 - -
Prci14g0416 243 MobiDBLite consensus disorder prediction 1 22 - -
Prci14g0416 243 Coils Coil 83 113 - -
Prci14g0416 243 Gene3D - 38 108 IPR036638 GO:0046983
Prci14g0416 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 42 93 IPR011598 GO:0046983
Prci14g0416 243 SMART finulus 48 99 IPR011598 GO:0046983
Prci14g0416 243 MobiDBLite consensus disorder prediction 1 55 - -
Prci14g0416 243 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 24 239 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0416 Prci-Chr14 3190588 3191530 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0416 13 239 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.083 4.41e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci14g0416 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0416 - - pcin:129293081 458.759