Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0414 ATGGCTCAAATGGTTTGTGGTTCTTGTCATCGCCTTCTTTCATATCAACGAGGTGCCAGACATGTCAAGTGTTCTTGCTGTCAGACAGTAAATCTTGTGTTAGAAGCTGATCAGGTTGGGCAAGTCAAGTGTGGGAGCTGTGCAGTACTGCTAATGTACCCATATGGCGCGTCCCAAGTTAGGTGTTGCTCCTGCCAGTTTGTGACGAAAATTGAGGAACACAACAAACGGCCTCCCTGGTCTGTACTTCAACTGCAAGGGAAATCTACTCCTCCTAAATCAGTTTCTTAG 291 0.4639 MAQMVCGSCHRLLSYQRGARHVKCSCCQTVNLVLEADQVGQVKCGSCAVLLMYPYGASQVRCCSCQFVTKIEEHNKRPPWSVLQLQGKSTPPKSVS 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0414 96 PANTHER PROTEIN LSD1 1 87 IPR040319 -
Prci14g0414 96 NCBIfam zinc finger domain, LSD1 subclass 3 33 IPR005735 -
Prci14g0414 96 NCBIfam zinc finger domain, LSD1 subclass 41 70 IPR005735 -
Prci14g0414 96 Pfam LSD1 zinc finger 6 30 IPR005735 -
Prci14g0414 96 Pfam LSD1 zinc finger 44 68 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0414 Prci-Chr14 3178444 3182100 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Prci14g0414 zf-LSD1 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0414 - - pcin:129292659 207.223