Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0413 ATGTCGATGAAGTTAGAGCCGTTGGATTTAGGAGTTCAGATTCCATACCACTTCAGATGCCCCATCTCCCTCGAGCTGATGCTTGAACCCGTTACTATATCCACGGGTCAGACCTACGACCGAACCAGCATCCAGTCGTGGTTTGCCGCCGGTAACACCACCTGTCCCGTCACCAGAGCGACTATTTCTGATTTTACCCTCATCCCTAACCACACTCTTCGCCGCCTTATCCAAGACTGGTGCGTTTCCAATCGCGATTTAGGAGTCCAACGGATCCCGAGTCCGACCCAAGCCGCCCGCCCGGCTGTGGTTCGGACGTTGTTGAATCAAGCATCGTCGGGGACGAGTACTTCTCAGTCGCGTATCTCTGCGCTGCGACGGCTTAGAGGATTCGCTAGTGGCTCCGAGGACAATCGATCTCTAATTGGATCTCACAACGCCCGCCGGATTCTGCTAAATATCCTTTTTGATGCAAATTCGGATTGTTTGGAGTTGAAGCACGAGTCTCTCGCGCTTCTGGTTTATTTTTCACTCGCTGAATCTGAATGGGTCTTCATCGCATCGGAACCAGAGAGAATCAAGTATTTGTCCCGCTTGCTGTTTCATTCCTCCATCGAAGTTCGAGTTAACTCAGCCACACTGATCGAGACCGTCGTGAGCGGGACCCGTTCGCCGGAGCTGCGTGCTCAAATCAGCAATGTCGATGAAATCTACGAAGGTGTTGTTGACATGTTGAAGAGTCCGGTTTCGCACCCTCGCGCTCTCAAGATTGGGATCAAGGCCTTGTTCGCTTTGTGCCTGCTGAAACAAGCACGACATAAAGCAGTGGCCGCCGGAGCGCCGGAGATCCTCGTCGAACGGCTTGGTGATTTCGAGAAATGCGAGGCCGAGAGAGCTGTGGTGACGATTGAGTTGCTTTGTCGAATTCCGGAGGGGTTGGCTGCATTTGCAGGTCATGCTCTGACGGTGCCGCAGCTGGTGAAAACGATACTGAAGATATCAGACCGGGCGACAGAGCACGCAGCCGGAGCGCTACTGTCTCTGTGCTCGAAGTCGGAGGAGTGCCGGAGGAAGGCGGTGGCAGCGCGTGTGCTGACGCCGCTGCTATTGCTGGTGCAGAGTGATTGCACGGAGAGGGCAAAGAGGAAGGCGCAGATGTTGCTGAAGCTGCTTCGGGATTCGTGGCCAAGAGATTGTGTCGGAAACTCTGACGATTTTGCATGCAGCGAACTTGTAGTTCCCTTTTGA 1248 0.5385 MSMKLEPLDLGVQIPYHFRCPISLELMLEPVTISTGQTYDRTSIQSWFAAGNTTCPVTRATISDFTLIPNHTLRRLIQDWCVSNRDLGVQRIPSPTQAARPAVVRTLLNQASSGTSTSQSRISALRRLRGFASGSEDNRSLIGSHNARRILLNILFDANSDCLELKHESLALLVYFSLAESEWVFIASEPERIKYLSRLLFHSSIEVRVNSATLIETVVSGTRSPELRAQISNVDEIYEGVVDMLKSPVSHPRALKIGIKALFALCLLKQARHKAVAAGAPEILVERLGDFEKCEAERAVVTIELLCRIPEGLAAFAGHALTVPQLVKTILKISDRATEHAAGALLSLCSKSEECRRKAVAARVLTPLLLLVQSDCTERAKRKAQMLLKLLRDSWPRDCVGNSDDFACSELVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0413 415 Gene3D - 292 392 IPR011989 -
Prci14g0413 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Prci14g0413 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Prci14g0413 415 Gene3D - 86 290 IPR011989 -
Prci14g0413 415 PANTHER WDSAM1 PROTEIN 12 400 IPR045185 GO:0061630
Prci14g0413 415 SUPERFAMILY RING/U-box 12 85 - -
Prci14g0413 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Prci14g0413 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Prci14g0413 415 FunFam U-box domain-containing protein 31 13 87 - -
Prci14g0413 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 85 IPR013083 -
Prci14g0413 415 SUPERFAMILY ARM repeat 103 391 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0413 Prci-Chr14 3166898 3168580 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0413 1 415 U-box Gene Family AT1G49780 64.929 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0413 - - var:108341190 607.06