Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0412 ATGTCAATGAACTTAGAGCCGTTGGATTTAGGAGTTCAGATTCCATACCACTTCAGATGCCCCATCTCCCTCGAGCTGATGCTTGAACCCGTTACTATATCCACGGGTCAGACCTACGACCGAACCAGCATCCAGTCGTGGTTTGCCGCCGGTAACACCACCTGTCCCGTCACCAGAGCGACTATTTCTGATTTTACCCTCATCCCTAACCACACTCTTCGCCGCCTTATCCAAGACTGGTGCGTTTCCAATCGCGATTTAGGAGTCCAACGGATCCCGAGTCCGACCCAAGCCGCCCGCCCGGCTGTGGTTCGGACGTTGTTGAATCAAGCATCGTCGGGGACGAGTACTTCTCAGTCGCGTATCTCTGCGCTGGGACGGCTTAGAGGATTCGCTAGTGGCTCGGAGGACAATCGTTCTCTAATTGGATCTCACAACGCCCGCCGGAGTCTGCTAAACATCCTTTTTGATGCAAATTCGGATTGTTTGGAGTTGAAGCACGAGTCGCTGGCGCTTCTGGTTTATTTTTCACTCGCTGAATCTGAATGCGTCTTCATCGCGTCGGAACCGGAGAGAATCAAGTATTTGTCCCGCTTGCTGTTTCATTCCTCCATCGAAGTCCGAGTTGACTCGGCCACACTGATCGAGACCGTCGTGAGCGGGACTCGTTCGCCGGAGCTGCGTGCCCAAATCAGCAATGTCCATGAAATCTACGAAGGTATTGTTGACATGTTGAAGAGTCCGGTTTCGCACCCTCGCGCTCTCATGACTGGGATCAAGGCCTTGCTCGCTTTGTGCCTGCTGAAACAAGCACGACATAAAGCAGTGGCCGCCGGAGCGCCGGAGATCCTCGTCGAACGGCTTGGTGATTTCGAGAAATGCGAGGCCGAGAGGGCTCTGGTGACGATTGAGTTGCTTTGTCGAATTCCGGAGGGGTTGGCTGCATTTGAAGGTCATGCGCTGACGGTGCCGCAGCTGGTGAAAACGATACTGAAGATATCAGACCGGGCGACAGAGCACGCAGCCGGAGCGCTGCTGTCTCTGTGCTCGGAGTCGGAGGAGTGCCGGAGGAAGGCGGTGGCAGCGCGTGTGCTGACGCCACTCCTATTGCTGGTACAGAGTGATTGCACGGAGAGGGCAAAGAGGAAGGCGCAGATGTTGCTGAAGCTTCTTCGGGATTCGTGGCCAAGAGATTGCGTCGGAAACTCTGACGATTTTGCATGCAGCGAACTTGTAGTTCCGTTTTGA 1248 0.5457 MSMNLEPLDLGVQIPYHFRCPISLELMLEPVTISTGQTYDRTSIQSWFAAGNTTCPVTRATISDFTLIPNHTLRRLIQDWCVSNRDLGVQRIPSPTQAARPAVVRTLLNQASSGTSTSQSRISALGRLRGFASGSEDNRSLIGSHNARRSLLNILFDANSDCLELKHESLALLVYFSLAESECVFIASEPERIKYLSRLLFHSSIEVRVDSATLIETVVSGTRSPELRAQISNVHEIYEGIVDMLKSPVSHPRALMTGIKALLALCLLKQARHKAVAAGAPEILVERLGDFEKCEAERALVTIELLCRIPEGLAAFEGHALTVPQLVKTILKISDRATEHAAGALLSLCSESEECRRKAVAARVLTPLLLLVQSDCTERAKRKAQMLLKLLRDSWPRDCVGNSDDFACSELVVPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0412 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Prci14g0412 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Prci14g0412 415 PANTHER WDSAM1 PROTEIN 12 400 IPR045185 GO:0061630
Prci14g0412 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Prci14g0412 415 SUPERFAMILY RING/U-box 12 85 - -
Prci14g0412 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Prci14g0412 415 Gene3D - 89 403 IPR011989 -
Prci14g0412 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 86 IPR013083 -
Prci14g0412 415 SUPERFAMILY ARM repeat 103 391 IPR016024 -
Prci14g0412 415 FunFam U-box domain-containing protein 31 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0412 Prci-Chr14 3150038 3151575 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0412 1 415 U-box Gene Family AT1G49780 63.744 2.40e-180 507
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0412 - - var:108341190 585.489