Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0376 ATGGACGACTATTTGAGCAGCGATGAAGATTATCATTACTCCGATCAGGGCTCCGTGGAAGGCTTTGAAAACGATGAGCCCGATATTCGGTTGGTCACTCCCAAGGGTCCTACAACTCTGGTGATTACAAGGGAATCACTTCTAGCTGCACAGAAAGAGGATTTGCGCCGAGTAATGGAAATGCTATCATTAAGAGAGCACCATGCACGTACTCTGCTTATTTATCATCGTTGGGATGTGGAGACATTGTTTGAAGTGTATGTAGACAAGGGAAAAGCTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGGACAGTGTGATCCTGACCCATCAGTTCCTTCTTCAGTCAGATGTGATATCTGCATAGAGGATGTTCCCAGTCATGAAGCCACAAGAATGGACTGTGGGCACTGTTTTTGCAACAGCTGTGAGTTTATGTGTTGGACAGAGCACTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGTATAAGGTGCATGGCACACAGATGTAATGCTATTTGTGATGAAGCTGTTGTGAGAACTCTTGTCAGTAAAAAGGACCCTGATGTGGCAGAGAAATTTGATCGTTTTCTTCTTGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATTCCTCATTGTGGGAATGCAATTCGTGTTGAGGATGATGAATTATGTGAGGTAGAATGTTCATGTGGCCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACACATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGATGAATCGGAAACTGTTAATTGGATAGCAGTTCATACAAAACCTTGTCCAAAATGCCACAAACCAGTGGAGAAGAATGGTGGTTGCAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGCTTTGTGGTGGAGCTACTGGACGAGAACACACTTGGTCAAGTATAGCTGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAACGGGCAAAGCGAGATCTATATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGACTCTTTTAAACTTGAAAGTAAATTGAAAGAGACTATACAAAGCAAGGTTGCTATTTCAGAGGAGAGGGATTCTACGCTCAGAGATTATAGTTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTGTCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGCAAAGGGAAATAAAACAACACTTATTTGAGGATCAGCAGCAACAGCTTGAGTCCAATGTTGAAAAGCTTTCCAAAATTCTGGAGGAACCCTTTGACCAGTTTACAGATGATAAAGTTATGGAGCTAAGGATTCAAGTCATTAACCTGTCCACCATTATTGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAATTGGGCATTCACAGTATTGCTCCATACAAGTCAAAGGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACTATAAAGCCAATACTACTGGTGGAACAGCAGAACTCGATCGGCCCTCTGGGTCTGGGAGTTCAGATGATATTGGATGTCCTTCTCATAAGCGTGCTAGGAAAGAAGGTGCTGGTGGTGTCCTTTTTGATCTAAACTTGCCAGCGGAGGTTGTAGACAGAAATTGA 1749 0.422 MDDYLSSDEDYHYSDQGSVEGFENDEPDIRLVTPKGPTTLVITRESLLAAQKEDLRRVMEMLSLREHHARTLLIYHRWDVETLFEVYVDKGKAALFAEAGVSVDGQCDPDPSVPSSVRCDICIEDVPSHEATRMDCGHCFCNSCEFMCWTEHFIVKINEGQSKRIRCMAHRCNAICDEAVVRTLVSKKDPDVAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQSKVAISEERDSTLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEQREIKQHLFEDQQQQLESNVEKLSKILEEPFDQFTDDKVMELRIQVINLSTIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSTCWNYKANTTGGTAELDRPSGSGSSDDIGCPSHKRARKEGAGGVLFDLNLPAEVVDRN 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0376 582 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 407 IPR031127 GO:0004842|GO:0016567
Prci14g0376 582 FunFam RBR-type E3 ubiquitin transferase 252 499 - -
Prci14g0376 582 SMART ibrneu5 264 329 IPR002867 GO:0008270
Prci14g0376 582 SMART ibrneu5 194 256 IPR002867 GO:0008270
Prci14g0376 582 ProSiteProfiles TRIAD supradomain profile. 115 333 IPR044066 -
Prci14g0376 582 MobiDBLite consensus disorder prediction 537 561 - -
Prci14g0376 582 CDD BRcat_RBR_ANKIB1 201 265 - -
Prci14g0376 582 MobiDBLite consensus disorder prediction 1 27 - -
Prci14g0376 582 Pfam Ariadne domain 335 582 IPR045840 -
Prci14g0376 582 CDD Rcat_RBR_ARI1-like 278 330 - -
Prci14g0376 582 SUPERFAMILY RING/U-box 194 262 - -
Prci14g0376 582 ProSiteProfiles Zinc finger RING-type profile. 119 171 IPR001841 -
Prci14g0376 582 SUPERFAMILY RING/U-box 264 321 - -
Prci14g0376 582 FunFam RBR-type E3 ubiquitin transferase 114 208 - -
Prci14g0376 582 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 208 IPR013083 -
Prci14g0376 582 Pfam IBR domain, a half RING-finger domain 194 256 IPR002867 GO:0008270
Prci14g0376 582 SUPERFAMILY RING/U-box 116 206 - -
Prci14g0376 582 Gene3D - 252 499 - -
Prci14g0376 582 CDD RING-HC_RBR_TRIAD1 117 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0376 Prci-Chr14 2880990 2886720 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0376 59 530 ARIADNE family AT2G16090 74.580 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0376 K11968 - gmx:100783343 1006.13