Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0078 ATGAACATAATCACGCAAAGCCCGTCCGAGAGACTAAGGCCACTTGTGGGTTTGAATGGCTGGGACTACTGTGTTCACTGGAAGCTAAGCCAAGACCAGAGGTTTCTTGGATGGATGGGATGCTCTTGTGCTGGCACTGAAGGTAGCCAAAATGGTGGAGAAGAGCTTCTTTTCCCTGTTTCATCAGTGGCTCCATGCAGAGATAACGTGTTTCCTCATTCCAGAACGAAGTCCTGTGATTTACTTTCCCAGCTTCCCACTTCCATAACCTTAGATTCTGGGATTCGTGCAGAGACACTATTGTCCAATCAGCCCAATTGGGTGAACTATTCTAATAGCTTTGACCCAAACACTTTGGAAGAAGCAATTGGGACCCAGGTTTTGATTCCTGTGCCTGGGGGACTAGTTGAGCTGTTCGTGACAAAGCAAGTGCCAGAAGATCAACAGGTGATAGATTTCATCACAGCCCACTGCATTATGGATATGAGCTTCGACATTGACGTGAATTCTCTCAGTCATATGCAACCAAATATGAATCCCCCTTTAGGGGATGAGAATGATGGGAATACAATAGCATCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCACCGATGAACTTGATGCAGCAATATAGCTACAGCAACCCGCAGAACATAATGAAAAGCGACGCCTTTTTCGAAGATTCCCAAGGTTCATTCCTATTCGACAAAAGCCAGCAGTTTGTGGAGCCTATTGAGAAGAAGGAGCAGCAAGGGGACGATAAGGATTTAATCAAACACTTGGTGGGAAGGTCAGATTCGATGTCGGATTGCAGTGATCAGAACGAAGAAGAGGATGATGGGAAGTACAGGCGAAGGAACGGGAAAGGGAATCAATCGAAGAACCTTCTGGCAGAGAGGAGGAGGAGGAAGAAGCTGAACGACAGCTTGTATAATCTTCGGTCCTTGGTTCCCAGAATTTCTAAGCTAGACAGAGCGTCGATTCTCGGGGACGCGATTGAGTACGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTGCAAGACGAGCTCGAAGAACACTCAGAAATGGATGAACAGCAACAACCAGATAATGTTGTTGGGGTTGAAGTGGGACCAAAAGCCGATCAAATGAAGACTCAAAATGGGTTTCACCGGGGGAAATCAGGGAATGGCAATGTCTGGAAGCAAAAGCAGGAATTTGACGCTCCAAACGATAAGCAGACACAACAAATGGAGGCGCAAGTGGAAGTGGCAGTGATAGAAGGGAAAGAATTGTACGTGAAGGTGTTCTGCGAGCACAGACCTGGTGGGTTTGTGAAACTGATGGAGGCATTCTACGCTCTGGGGCTGGAAGTCATCCATGCGACAGTGACCAGCAACAAGTGCCTCGTCTCCAATGTTTTCAAAGTGGAGTATGGTGTGTTTGGAGGGGGCAGAAGAAGGAGGATGAAATGGTAA 1467 0.469 MNIITQSPSERLRPLVGLNGWDYCVHWKLSQDQRFLGWMGCSCAGTEGSQNGGEELLFPVSSVAPCRDNVFPHSRTKSCDLLSQLPTSITLDSGIRAETLLSNQPNWVNYSNSFDPNTLEEAIGTQVLIPVPGGLVELFVTKQVPEDQQVIDFITAHCIMDMSFDIDVNSLSHMQPNMNPPLGDENDGNTIASETSSLPPHDQCNSPMNLMQQYSYSNPQNIMKSDAFFEDSQGSFLFDKSQQFVEPIEKKEQQGDDKDLIKHLVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEEHSEMDEQQQPDNVVGVEVGPKADQMKTQNGFHRGKSGNGNVWKQKQEFDAPNDKQTQQMEAQVEVAVIEGKELYVKVFCEHRPGGFVKLMEAFYALGLEVIHATVTSNKCLVSNVFKVEYGVFGGGRRRRMKW 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0078 488 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 10 155 IPR025610 -
Prci14g0078 488 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 357 IPR036638 GO:0046983
Prci14g0078 488 MobiDBLite consensus disorder prediction 265 304 - -
Prci14g0078 488 MobiDBLite consensus disorder prediction 176 211 - -
Prci14g0078 488 SMART finulus 299 348 IPR011598 GO:0046983
Prci14g0078 488 Coils Coil 332 362 - -
Prci14g0078 488 CDD bHLH_AtAMS_like 296 365 - -
Prci14g0078 488 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 293 342 IPR011598 GO:0046983
Prci14g0078 488 Pfam Helix-loop-helix DNA-binding domain 300 343 IPR011598 GO:0046983
Prci14g0078 488 Gene3D - 282 358 IPR036638 GO:0046983
Prci14g0078 488 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 142 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0078 Prci-Chr14 731329 734077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0078 6 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.390 2.19e-128 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci14g0078 bHLH-MYC_N 2.2e-19 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0078 - - gmx:100798282 588.956