Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0038 ATGTATCTCCCCTTCCTTCCCCTCTCCACAACACGTCACAATATGGCCGTCTTCCTTTTGCTCTTCTCCCTCGTTGTTTCTTCCGCCACTGCTTGCGATCGCTGTGTCCTCCAATCCAAGGCTGCCTACTTCTCTAAATCTTCTGCTCTTACCTCTGGGGCGTGCGGGTATGGCTCCTTGGCCGTGGGATTGAGCGGCGGACACCTGGCAGCTGCCTTTCCTTCTCTATACAAAGACGGTGCCGCTTGCGGCGCCTGCTTTCAGATAAGATGCAAGAATCCGAGCTTGTGCAAGAAAACAGGGACGACCGTGGTTGTCACTGATCTCAACAACAACAACAATCAAACTGATTTCGTGCTCAGCAGCAGGGCCTTCTCGGCCATGGCTGACAAGGGTATGAGCGAGCAAATTTTGAAGCTCGGAATCGTGGACGTCGAGTACAAGAGGGTACCATGCGTGTACAAAAACAGGAACCTGGGAGTGCGGGTGGAAGAATCAAGCAAGAAACCGAACTACCTGGCGATCAAATTTTTGTACCAGGGCGGTCAAACGGAGATAGTGGGGGTGGACGTGGCTCAGGTGGGGTCGTCGAACTGGAGATTCATGAGCAGGAAGAACGGGGCAATATGGGAGACGGAGAGGGCGCCGGAGGGCGCACTGCAGTTGAGGATGGTGGTGACGTCGGGATACGACGGGAAATGGATATGGGCTCCGAAGGTGCTGCCGGAGGACTGGAAGGCTGGCCTCATCTACGACTCCGGCGTTCAGATCACTGATATTGCCAAACAGGCATGCTCTCCCTGCGACGACGGCCCCTGGTCATGA 825 0.5515 MYLPFLPLSTTRHNMAVFLLLFSLVVSSATACDRCVLQSKAAYFSKSSALTSGACGYGSLAVGLSGGHLAAAFPSLYKDGAACGACFQIRCKNPSLCKKTGTTVVVTDLNNNNNQTDFVLSSRAFSAMADKGMSEQILKLGIVDVEYKRVPCVYKNRNLGVRVEESSKKPNYLAIKFLYQGGQTEIVGVDVAQVGSSNWRFMSRKNGAIWETERAPEGALQLRMVVTSGYDGKWIWAPKVLPEDWKAGLIYDSGVQITDIAKQACSPCDDGPWS 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0038 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 157 IPR007112 -
Prci14g0038 274 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Prci14g0038 274 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Prci14g0038 274 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Prci14g0038 274 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576
Prci14g0038 274 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Prci14g0038 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 253 IPR007117 -
Prci14g0038 274 Pfam Expansin C-terminal domain 161 242 IPR007117 -
Prci14g0038 274 SUPERFAMILY PHL pollen allergen 157 253 IPR036749 -
Prci14g0038 274 Gene3D - 154 258 IPR036749 -
Prci14g0038 274 Gene3D - 23 152 IPR036908 -
Prci14g0038 274 PRINTS Major pollen allergen Lol pI signature 129 144 IPR005795 GO:0005576|GO:0019953
Prci14g0038 274 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Prci14g0038 274 PRINTS Major pollen allergen Lol pI signature 162 177 IPR005795 GO:0005576|GO:0019953
Prci14g0038 274 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576|GO:0019953
Prci14g0038 274 SMART dpbb_1 70 147 IPR007112 -
Prci14g0038 274 CDD DPBB_EXLA_N 27 154 - -
Prci14g0038 274 PANTHER EXPANSIN-B3 22 256 - -
Prci14g0038 274 Pfam Lytic transglycolase 72 147 IPR009009 -
Prci14g0038 274 SUPERFAMILY Barwin-like endoglucanases 23 155 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0038 Prci-Chr14 474813 476311 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0038 29 274 Expansin Gene Family AT4G38400 64.919 3.63e-110 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0038 - - pcin:129293424 544.658