Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0020 ATGTCCAACTCCGAGTCCGGAGCCGTTGCCACTCCGAGCAGCACCCAGAAACAGCACTGTCGAAGCAAACGAAAGAAACGAATCACCGTGACGGAGCAGGGCGTGGGTTTCAAGCCCAACTACGCCAAACAACCCCACCCTGATGCGCCTGTGATTACCCGCCCGTGCACCGAGTGCGGGAAGAAGTTCTGGTCATGGAAGGCTCTCTTCGGCCACATGCGGTGTCATCCTGAACGCCAGTGGCGCGGCATCAACCCACCCCCCAATTTCCAGCGGCAACCTCCTCCGGAGAAGCAACCACCGGAATTCATGACCCCAGAAGACCACGAGATCGCGGCCGGTCTGTTGTTGCTGGCTAACTCGGACGGGGCGGGGCCGTCGCGCTTCGAGTGCTCCAGTTGCAAGAAGGTGTTCGGGTCACACCAGGCTCTGGGAGGGCACAGGGCCAGCCACAAGAACGTGAAGGGGTGTTTCGCCAACGAAGAAGATGATGAGATGATGATGGCCCTGGAAGGGCACAAGTGTGGCATATGCCTGAGGGTATTCTCCAGCGGCCAAGCGCTGGGCGGTCACATGAGGTGTCACTGGGACAAGGGCGACCCTGACCCTTCCATCGCCCACCATCATCATCATCATCATCAGGGATGTGCCCTTGACCTCAATTTGCCTCCCCCTCTTCAACACGATCTGGATTTGAGATTGGGACTTTAA 711 0.5851 MSNSESGAVATPSSTQKQHCRSKRKKRITVTEQGVGFKPNYAKQPHPDAPVITRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNFQRQPPPEKQPPEFMTPEDHEIAAGLLLLANSDGAGPSRFECSSCKKVFGSHQALGGHRASHKNVKGCFANEEDDEMMMALEGHKCGICLRVFSSGQALGGHMRCHWDKGDPDPSIAHHHHHHHQGCALDLNLPPPLQHDLDLRLGL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0020 236 Pfam C2H2-type zinc finger 128 152 - -
Prci14g0020 236 Pfam C2H2-type zinc finger 173 198 - -
Prci14g0020 236 Pfam C2H2-type zinc finger 55 78 - -
Prci14g0020 236 Gene3D Classic Zinc Finger 127 195 - -
Prci14g0020 236 MobiDBLite consensus disorder prediction 1 17 - -
Prci14g0020 236 SMART c2h2final6 54 76 IPR013087 -
Prci14g0020 236 SMART c2h2final6 173 195 IPR013087 -
Prci14g0020 236 SMART c2h2final6 129 151 IPR013087 -
Prci14g0020 236 SUPERFAMILY beta-beta-alpha zinc fingers 55 151 IPR036236 -
Prci14g0020 236 MobiDBLite consensus disorder prediction 81 104 - -
Prci14g0020 236 MobiDBLite consensus disorder prediction 1 46 - -
Prci14g0020 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 195 IPR013087 -
Prci14g0020 236 SUPERFAMILY beta-beta-alpha zinc fingers 172 198 IPR036236 -
Prci14g0020 236 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Prci14g0020 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Prci14g0020 236 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Prci14g0020 236 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Prci14g0020 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Prci14g0020 236 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 21 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0020 Prci-Chr14 292388 293224 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0020 41 236 C2H2 Transcription Factor Family AT4G35280 55.844 1.45e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci14g0020 zf-C2H2_6 3.1e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0020 - - cit:102607766 257.299