LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci14g0019	ATGGAATATGATGCCTTGGTACACAATAATTCTGCATTCGAGACCTTATCAGACAGTAGTGCCTCAGTCTCGGAAGGGAATGTCATTGACGAGCTCTTTGCACATGGTTGCTGGCTTGAAACCACTGGAGGATCATACAACTTCACGCAGCCTTGTGCTACGAATCCCCCTTCTCTCAGTGACCCTAATTTGCACTATTGGGCATCATCAGACCCAAATCCCCAAATCTATCAACAAGAATCAGAGGTAAGCTTTCCATTCCAATCCGAAAGTTTTGCGGTTGCAAGCGCTGAAGTGGGTAAAAGGTGGTGGATAGGGCCAAAAGCAAATCCCGTTCCATCTTCCTCAGTCAAAGAAAGATTAGTGCTTGCCGTGGGGTACTTGAGAGAATACACCAAAAATACCAACATGTTTATTCAGATATGGGTGCCCACTAGGAGAGAGGGAGCATCCGTTCTAACCAGTGCTCACGATCACGTTCCCCCATGCTCATCCGTTGATGATCCAAACTGTAAGACCCTTGAATATTACCGAAATGTTTCCAAAGGTTATCAGTTGGCTGCCGAGGAGGATTCAGAAGAGTGTCGAGTAGTCCTAGGAAAGTTGCCTGATCAGTGGAGCCCCACTGTTCGGTTTTTCAAAAGCCACGAGTATGTTACGTATGTTAATTATGCACAGCAGCACTATGATTTTCGTGGATCATTGGCCCTTCCCGTGTTTGAGCGTGGCAGCGGGACATGCCTTGGCGTTGTTGAGATTGTAATGACCAATCACAACATCAACTGTCATCCACAAATTGACAATGTCTGCCATTCTCTCCAGACTGTTGATTTTAGTAAGAATTGCCAGAACCTTATTTCTCCAGCCGTGAAGGTATTTGACGACTTGTACCTAGCTGCACTGAATGAGATAATAGAGGTGTTGACCTCAGTGTGCAAGACACATAATTTGCCTTTAGCTCTGACTTGGGCACCCTGCGGACAACAAGGTAAGGGAGGATGTCCGAACGACAATTTCGTGGGTTGTTTGTCGACCGTGGATTCTGCTTGTTGCGTGGCGGATTTAGAGTTGCTCGGGTTCCAAGAAGCCTGCTCTGAGTACCACCTTCTCAGAGGGCAAGGTATTGTTGGCACAGCATTCACCACCACCAAGCCATGCTTTGCAACGGACATAACTGCCTTCACCAAAACGGAGTATCCTCTGTCTCACCACGCTACAATGTTTGGGTTACATGCCGCCGTCGCTATTCCCCTCCGTAGTGTCTACACCGGATCCGCTGATTTCGTGTTGGAGTTTTTCTTACCGAGGAATTGCCATGACGGTGAAGAACAAAAGCAGATGCTGAATTTACTATGTATTGTGGTACAACAAGCTTGCCGGAGTTTACATGTTGCCATGGACAAACAGGTCGAGGAAGAATTCACGTTTACAGTCGGAGACATGCTGGCTGCGGCTTCAAAAGGTGGAGCCCACAAAGAAGAAACTCTTGAGTTTGGGGGGTCTTGTAATTTAGAAGAACTGTCTTCAAAAGACTCGTCGTGGATTGCACATATGATGGAGGCTCAAACACAGCACAAGGGTAAAGGCGTGTCTGTGTCGTTGGAATACCTGGAAGAACCAAAACATGAGTTCAAAGTGACAACCAACTGGGAGGGCACTCACGGGGGATTCTGCCATGGGCAGACATTTTCTGATTATGTACAAGTTCACCAGAGCTCAGCAGTATCCAGGGCGAGTGTAGAGGGTGGAGGAGAATCTTATGGTTTTGGTGGACGCCGCTCATCGGGCAGCAGAAAATCAGGCGAGAAGAGACGAACCAAGGCAGAGAAGACTATCAGCTTGCCAGTTCTCCGACAATACTTTGCAGGAAGCCTTAAAGATGCTGCCAAGAGCATCGGCGTATGTCCCACGACTCTTAAAAGGATATGCAGACAACATGGAATTACCAGATGGCCTTCAAGGAAAATAAAGAAGGTAGGACATTCGTTAAGGAAACTTCAGCTTGTGATCGATTCAGTGCAAGGTGCTGAGGGCGCCATTCAGATCGGTTCCTTCTATTCCAGTTTTCCAGAGTTGAGCTCCACAAATTTGTCTGGCAGTGGTCCCTCTCAGTCATCAAACATCAGCGGCGACCACTCTAAGAAAGTACATGCTCATGCCGAGAACGGCTTATATAGCCACGGTGGCACAACATTAAAATCTCCGCCCTCTTGTTGCAGCCAGACTTCCACCATCATCAACGCCGTGTCCAGTGGGGATGTTTTAATGGCAGAAAACCCGGAAGGGTCGCTCAAGAGAGCTCATACTCAAGTCGAAGCGGAGTTGCATGAGGATACAAAACATTTCGCAAGCCGGCAAAAGCCGCTTGGTGAGCATCCAAGTGTCGAGGTTTTGCCTCCATTGCCTGAAAATAGTGGGTGGAACGCGCGAGACGGAGGTGCTTTTAGGGTGAAAGCTACTTTTGGGGATGAAAAAATTCGTTTTAGCTTGCAGCCGAATTGGGGGTTTCGAGAACTGCAACTGGAGATCGCAAGACGATTCAATCTAGACGATGTGAGCAACATCGGTCTCAAGTATTTAGATGAGGAGGGTGAGTGGGTTCTTTTAACATGCGATGCTGATCTTGAGGAGTCTAAAGACGCATATCGATCATCTAAGAGCCGTACAATGAGGTTCGCCCTCTTTCAAGCTTCGCCGCTAAATCTGGCCAACACTTTTGGCTGCAACAGCTCATCCTGA	2739	0.4772	MEYDALVHNNSAFETLSDSSASVSEGNVIDELFAHGCWLETTGGSYNFTQPCATNPPSLSDPNLHYWASSDPNPQIYQQESEVSFPFQSESFAVASAEVGKRWWIGPKANPVPSSSVKERLVLAVGYLREYTKNTNMFIQIWVPTRREGASVLTSAHDHVPPCSSVDDPNCKTLEYYRNVSKGYQLAAEEDSEECRVVLGKLPDQWSPTVRFFKSHEYVTYVNYAQQHYDFRGSLALPVFERGSGTCLGVVEIVMTNHNINCHPQIDNVCHSLQTVDFSKNCQNLISPAVKVFDDLYLAALNEIIEVLTSVCKTHNLPLALTWAPCGQQGKGGCPNDNFVGCLSTVDSACCVADLELLGFQEACSEYHLLRGQGIVGTAFTTTKPCFATDITAFTKTEYPLSHHATMFGLHAAVAIPLRSVYTGSADFVLEFFLPRNCHDGEEQKQMLNLLCIVVQQACRSLHVAMDKQVEEEFTFTVGDMLAAASKGGAHKEETLEFGGSCNLEELSSKDSSWIAHMMEAQTQHKGKGVSVSLEYLEEPKHEFKVTTNWEGTHGGFCHGQTFSDYVQVHQSSAVSRASVEGGGESYGFGGRRSSGSRKSGEKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLRKLQLVIDSVQGAEGAIQIGSFYSSFPELSSTNLSGSGPSQSSNISGDHSKKVHAHAENGLYSHGGTTLKSPPSCCSQTSTIINAVSSGDVLMAENPEGSLKRAHTQVEAELHEDTKHFASRQKPLGEHPSVEVLPPLPENSGWNARDGGAFRVKATFGDEKIRFSLQPNWGFRELQLEIARRFNLDDVSNIGLKYLDEEGEWVLLTCDADLEESKDAYRSSKSRTMRFALFQASPLNLANTFGCNSSS	912

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci14g0019	912	MobiDBLite	consensus disorder prediction	581	608	-	-
	Prci14g0019	912	Pfam	RWP-RK domain	612	659	IPR003035	-
	Prci14g0019	912	ProSiteProfiles	RWP-RK domain profile.	598	679	IPR003035	-
	Prci14g0019	912	MobiDBLite	consensus disorder prediction	696	715	-	-
	Prci14g0019	912	CDD	PB1_NLP	815	896	IPR034891	-
	Prci14g0019	912	Gene3D	-	813	899	-	-
	Prci14g0019	912	MobiDBLite	consensus disorder prediction	696	711	-	-
	Prci14g0019	912	SUPERFAMILY	CAD & PB1 domains	804	899	-	-
	Prci14g0019	912	SMART	PB1_new	814	897	IPR000270	GO:0005515
	Prci14g0019	912	ProSiteProfiles	PB1 domain profile.	814	897	IPR000270	GO:0005515
	Prci14g0019	912	PANTHER	PROTEIN NLP8	67	900	IPR045012	GO:0003700
	Prci14g0019	912	Pfam	PB1 domain	815	896	IPR000270	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci14g0019	Prci-Chr14	265237	269167	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci14g0019	10	907	NLP Transcription Factor Family	AT4G35270	45.764	0.0	768

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Prci14g0019		PB1	3.1e-17	CL0072

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci14g0019	-		-	pcin:129292760	1810.81