Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci14g0002 ATGGGAGGTTTGGGGTGTGTTGTGGGGGGTTGTCCGCACGGTCGGATCCTGGTATCTTTTTGTATACACTCTGAACGGTCAGTGAAAACATTGTCGCCGCCATCAACCCTTCCTGGTTATACAGACAAAATACAAAGGGGAAATTGCTGCTCTACGAAATGCCGAATAAGTCTTAGACCTCTGTTTGCGCTGCCCGATAATAACGATTGCGGGCACACCGAATCAATCCATACTAAGGACGACGACGTTAATGAAGGAACACCAGCACAGCTAGAATTAACAGGATGGAGGCTGGTTACTGGAAATTCAGGAATAGTATCCTCGTGCTTGGTTGGTCTTCTCACTGGCGTCGCTGTTGTGCTCTTCAATAATCTAGTCCACGAAATTCGTGATTTGTTCTGGGGTGGGATTCCCGATCAGGGGGCCTCATGGTTGAGAGAACAACCTATTCAGGCAACCTGGACTAGGGTAATATTAATACCCGCTTTTGGGGGCATGAATGTGGCCATGTTGAATCTACTTCTTCAACGTCTTGCTTCCGCCGGGGAAGATCCATTGCTTGGCAATTCTGCTTATCTCAAGTCTGCTTCCCAACCTATTCTAAAGGCTATGGCAGCTTGTATCACTTTAGGCACAGGGAATTCCTTGGGTCCAGAGGGTCCCAGTGTTAATATTGGTACTTCCATTGCCAAAGCTGTTGGGTTTTTCTTTGACAAGAGTTCTAGCAGAATGCTGTCTCTTTTGGCCGCTGGATCTGCTGCTGGACTCTCTTCTGGTTTCAATGCTGCTGTTGCTGGTTGTTTTTTTGCTGTAGAATCTGTGTTATGGCCCTCACCCATAGATGTATCTATATCACTTACAAATACTACATCGATGGTAATACTTAGTGCTGTCATAGCTTCGGTGGTTTCTGAGGTTGGTCTTGGGTCTGAACCAGCCTTCAAAGTTCCAGAATATGACTTTCGTTCAATTGGTGCTACTGGGATGGCATATGGGAAGTTCATTGGTTATATTGCTGCTGAGTTCAACCCTAAAATTCATCTATCTGTTTTGGAGGTGGCTTCACCCCAAGCTTATGGCCTGGTTGGAATGGCTGCAACTCTCGCAGGAGTTTGTCAGGTGCCTCTGACTGCCGTGTTGCTGCTGTTTGAACTGACCCAAGACTATCAGATTGTTTTACCACTTCTTGGAGCTGTTGGCTTGTCTTCATGGATTTCGTCTGTTGAGACAAAGAAAGGGGATGACCGGGGCACCGTAGAGCACAAATTTATAAACTCAGATTTAATTATTCTTCCAGAAAAATCTCCCCGTAGTTCAATTGGATCATCTATTAATTGTGCCATTGCCGAAAGTGTGCCTAATACAAGTAACTCGTGTCAAGTTGAAAGTCTGCTTTGTGTAGAAGATGATATTGTTGAAACCACGCATTTAAGAAGAAAAACATTAGTTTCACAAGCCATGAAGACGAGATATGTGACAGCCTCAATGGGCATACGGCTTACAGAAGTATTGAGTCTCATGCTTGCAGAGAAACAGTCTTGTGCAGTGATTGTTGGTACTGATCATACTCTAATTGGCTTATTGACACTTAGAGACATCCGAGAGAACAGCAAATTTGCAAAAACACGAAGCAAAAAACCCAAGGAGCTTTTAGTTTCAGAACTGTGCCTTTTGGGAGGTGGAATATGTAATGTTCCATGGACTGCTACTCCTGATATGGATCTTCTTTCTGCTCAAAAGGCTATGAAGAAACATGGAGTCAATCAAGTTCCAGTTGTTGAAAAGCTCTGTGAAAGGGCATATCCAGTTGGCGTATTAGACAGTGACAGTATCAGTTTGACTTGCAGTGCTTTGGCCACTAAAGAATCCCTAGCGTAA 1878 0.4441 MGGLGCVVGGCPHGRILVSFCIHSERSVKTLSPPSTLPGYTDKIQRGNCCSTKCRISLRPLFALPDNNDCGHTESIHTKDDDVNEGTPAQLELTGWRLVTGNSGIVSSCLVGLLTGVAVVLFNNLVHEIRDLFWGGIPDQGASWLREQPIQATWTRVILIPAFGGMNVAMLNLLLQRLASAGEDPLLGNSAYLKSASQPILKAMAACITLGTGNSLGPEGPSVNIGTSIAKAVGFFFDKSSSRMLSLLAAGSAAGLSSGFNAAVAGCFFAVESVLWPSPIDVSISLTNTTSMVILSAVIASVVSEVGLGSEPAFKVPEYDFRSIGATGMAYGKFIGYIAAEFNPKIHLSVLEVASPQAYGLVGMAATLAGVCQVPLTAVLLLFELTQDYQIVLPLLGAVGLSSWISSVETKKGDDRGTVEHKFINSDLIILPEKSPRSSIGSSINCAIAESVPNTSNSCQVESLLCVEDDIVETTHLRRKTLVSQAMKTRYVTASMGIRLTEVLSLMLAEKQSCAVIVGTDHTLIGLLTLRDIRENSKFAKTRSKKPKELLVSELCLLGGGICNVPWTATPDMDLLSAQKAMKKHGVNQVPVVEKLCERAYPVGVLDSDSISLTCSALATKESLA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci14g0002 625 Gene3D Clc chloride channel 324 416 - -
Prci14g0002 625 CDD CBS_pair_voltage-gated_CLC_euk_bac 487 612 - -
Prci14g0002 625 Gene3D Clc chloride channel 102 323 - -
Prci14g0002 625 ProSiteProfiles CBS domain profile. 487 543 IPR000644 -
Prci14g0002 625 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 102 324 - -
Prci14g0002 625 Pfam Voltage gated chloride channel 193 317 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci14g0002 625 Pfam Voltage gated chloride channel 327 406 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci14g0002 625 SMART cbs_1 565 616 IPR000644 -
Prci14g0002 625 SMART cbs_1 490 538 IPR000644 -
Prci14g0002 625 SUPERFAMILY CBS-domain pair 480 607 IPR046342 -
Prci14g0002 625 Gene3D - 468 613 IPR046342 -
Prci14g0002 625 Pfam CBS domain 483 535 IPR000644 -
Prci14g0002 625 PRINTS Chloride channel signature 202 221 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci14g0002 625 PRINTS Chloride channel signature 253 272 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Prci14g0002 625 SUPERFAMILY Clc chloride channel 104 409 IPR014743 -
Prci14g0002 625 CDD Voltage_gated_ClC 112 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci14g0002 Prci-Chr14 6451 20839 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci14g0002 108 299 Ion Channels AT3G27170 25.926 7.84e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci14g0002 K03281 - gmx:100812959 398.667