Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1480g0001 ATGGAGGCCGCCACCACCACCACCCAAACAGGGAAGATACATGTTGCTGTCAGCAATGATCTGCAAGATGGAATCAAAACCTTGAATTGGGCTCTCAGTAAATGGAAGTCTCATCCTATTTCCATTGTTATTCTCTATGTCAGTCACAACACATCCAAGGATCACGTTTATACCCCATTTGGGAAACTCCCTGCAAGATCAGTGAACGATGAGATGTTACCAGCTCTCAGGAAGTTAGAGCAAGATAAAATCGACAGGCAGCTCTCTAAGTACGTAGCTTTCTGCGGGAAGGTACCAGCTGAAATACTCAAAGTCGAGAAATTCGATGAACCTATCCAAAAACGCATCACAGACTTGATTCTCGGTCTAGAGATAACCAAATTGGTCATTGGATTTTCAGTGATGAAGCCCTCCTGGAAATCAAAAGGTGCCATAAGCGGATTGTTCTATATTCATCAGCATAAGCCAGACTTCTGCGAACTGTTCATCTTATGTGGAGGGAAACAAGTATTCATGAGAGGATCACGGAACGATGAAAAGATCATGGAGGACGATAATGGTTTCGTGGTTGCTAGAATGAGAGACAAGATAACGTTCAAAGATTGGTTAGAGAAAGTGTTGCCTGAGGGAAAGGTGGATTCCCCTGCAGATTCTAGAAGCCGTCGTGGATTAGCAGCGAGTATGGAATCCCCAGGTTCACAGAACCAGTGGGAATTCTATCGCCAAGAAATTGAAACTTATTTCCAGGATTTGTTGTCTTCTAACACGAATGAACAAACTAGCCTTGAGCATCCAGACAGTGACGTCTCGAGGATTAGTGCAAATGAACCAGATGATGTCATTGAACAGAACAATTCTAATCTGAGGGGAGGGGAAAAAATTGAGACGCTGACGAGAAAACTGGAGGAGGCGCATAAGATGATCCAATTGAAGAGGAAAGAAGCAAAAGAGCACTGTGATAGACGTGCAAAAGCTGAATGGGCCGTTTGTTTATGCAACTCTCGGGCTCAGGAACTTGAAAGCAAAATAAAGGAAGAAATCGGCATGAAGGAGGAGCTGGCCAAAGAATTGGAAGCCGAGAAAGAAATTACATTCGAAACCAGACGTGATATTGAGGAAAGCGGGAAAAGGTTGAGCTCGCTGCTGGAGCTTCAATCGGAGCTCTCAAACAAGCTTCAGATCTCCACACAGGCAAGGTCACAAGCCGAAATCCAATTGGAGAATGCAGCGAACTCCAGGTCGGAGATGGTGGCTGAGATAGACGAGCTCAGGAGACAAAGAGACGTGCTTTACAGAAGGATAGAGTTCTGTAAAGAAAAGGACGCCATAGGAATGGCGGCCAGGCTGACTGAACCCAGTTTCAGTTTCAGAGAGTACACGACCCACGAGATCAGGTTGGCCACCGACGACTTCTCCGACCGCCTCCTGTTGAAGTCCGGTGGCGCCGACTGGACCGACGTTTATAGAGGAAAAATCAACCATTCCACAGTAGCCATCAAGATGCTCACTTCCACCCATGTCTTGTCCCCACAAGAATTCCAAGCTAAGGTGAGACTACTGGGTAGCATTCGACATCCTCACGTGGTGGCTATGGTGGGGTTCTGCACCGAGCTCAAATGCGTAGTTCTAGAATATATGAACAATGGGAGCCTGAGGGACATGCTATTTTCCAGAAGAAGAAACCGGGCCTTGGGTTGGCAAGACCGAATTAGGATAGCCGCAGAAGTTTGCTCGGGCCTGGCCTTTCTTCACTCGGCCCAGCCCATGCCCTTCGTTCATGGCCACTTAACTCCTTCCAGTATCCTCCTTGATCGCAATCTAGTTGCAAAAATCAAAGGCTTTGGGTCTAAAGAAGGCAGCCTAGAAGCAGACGTAAGGGCCTTCGGAGTCTTGATCATGCATCTCTTGACAGGAAGAAACTGGGTGGGTCTCGTTGAGGGCGAGGTGATGATGGGAGAAGATTTGGTTAAAGTTTTGGATGAGACAGCTGGGCCGTGGCCCATGAAAGTAGCCCAAAAGCTAGCAGGGCTAGCCGCGAAGTGTATGGGCTTTCCCAATGGGCCTCAGCCCAAGGAAGGATTGTGCATGGGAAATGCAATGATGGAACTAAATGAGATCAGAAGAGAGGCAAATCACGAAGTTGCAAGAGGAGACACGACGAGATTCACCGGAAGTGTAGATAGGGAAGATCTGATGGATGTGCCCAATGTTTTTCTTTGTCCCATACTTCAGGAGGTAATGAAGAACCCACACGTGGCAGCAGATGGGTTTTCATATGAATTAGAAGCAATAGAAGCATGGGTTGGTTCAGGGCATGATAGATCGCCAATGACAAATGCAAGACTAGCTCACTTGTTCTTTACCCCTAATCACTCTCTTCGCTCCTTAATTCGGGACTGGCAAACCAAAAGATCTTCTAAATTTGCAAATTAG 2433 0.4686 MEAATTTTQTGKIHVAVSNDLQDGIKTLNWALSKWKSHPISIVILYVSHNTSKDHVYTPFGKLPARSVNDEMLPALRKLEQDKIDRQLSKYVAFCGKVPAEILKVEKFDEPIQKRITDLILGLEITKLVIGFSVMKPSWKSKGAISGLFYIHQHKPDFCELFILCGGKQVFMRGSRNDEKIMEDDNGFVVARMRDKITFKDWLEKVLPEGKVDSPADSRSRRGLAASMESPGSQNQWEFYRQEIETYFQDLLSSNTNEQTSLEHPDSDVSRISANEPDDVIEQNNSNLRGGEKIETLTRKLEEAHKMIQLKRKEAKEHCDRRAKAEWAVCLCNSRAQELESKIKEEIGMKEELAKELEAEKEITFETRRDIEESGKRLSSLLELQSELSNKLQISTQARSQAEIQLENAANSRSEMVAEIDELRRQRDVLYRRIEFCKEKDAIGMAARLTEPSFSFREYTTHEIRLATDDFSDRLLLKSGGADWTDVYRGKINHSTVAIKMLTSTHVLSPQEFQAKVRLLGSIRHPHVVAMVGFCTELKCVVLEYMNNGSLRDMLFSRRRNRALGWQDRIRIAAEVCSGLAFLHSAQPMPFVHGHLTPSSILLDRNLVAKIKGFGSKEGSLEADVRAFGVLIMHLLTGRNWVGLVEGEVMMGEDLVKVLDETAGPWPMKVAQKLAGLAAKCMGFPNGPQPKEGLCMGNAMMELNEIRREANHEVARGDTTRFTGSVDREDLMDVPNVFLCPILQEVMKNPHVAADGFSYELEAIEAWVGSGHDRSPMTNARLAHLFFTPNHSLRSLIRDWQTKRSSKFAN 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1480g0001 810 CDD RING-Ubox_WDSUB1-like 735 790 - -
Prci1480g0001 810 Pfam U-box domain 734 804 IPR003613 GO:0004842|GO:0016567
Prci1480g0001 810 Pfam Protein tyrosine and serine/threonine kinase 483 615 IPR001245 GO:0004672|GO:0006468
Prci1480g0001 810 PANTHER OS02G0152300 PROTEIN 13 798 - -
Prci1480g0001 810 MobiDBLite consensus disorder prediction 256 286 - -
Prci1480g0001 810 Coils Coil 336 374 - -
Prci1480g0001 810 Coils Coil 399 440 - -
Prci1480g0001 810 Gene3D Phosphorylase Kinase; domain 1 446 545 - -
Prci1480g0001 810 SMART Ubox_2 737 800 IPR003613 GO:0004842|GO:0016567
Prci1480g0001 810 MobiDBLite consensus disorder prediction 211 230 - -
Prci1480g0001 810 Coils Coil 294 314 - -
Prci1480g0001 810 SUPERFAMILY RING/U-box 728 806 - -
Prci1480g0001 810 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 732 809 IPR013083 -
Prci1480g0001 810 ProSiteProfiles U-box domain profile. 733 807 IPR003613 GO:0004842|GO:0016567
Prci1480g0001 810 ProSiteProfiles Protein kinase domain profile. 473 787 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1480g0001 810 SUPERFAMILY Protein kinase-like (PK-like) 452 682 IPR011009 -
Prci1480g0001 810 Gene3D Transferase(Phosphotransferase) domain 1 546 620 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1480g0001 4 807 U-box Gene Family AT5G65500 46.585 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Prci1480g0001 PK_Tyr_Ser-Thr 5e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1480g0001 - - pcin:129299872 1340.87