Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1458g0001 ATGCTTTTCTCGTACACATTCAGAAACTTGTTCTTCTTCTGCTATCTCTTGCTGTCATCAACGACTGTGCCACAATACCAGAGTCGTAGGGAAGATGATGGCTACGTAAACTGCCACTACACCTACAATTGTGGGAACTTTGATATACCCTACCCTTTCTGGGGAGAAAACCGACCCGGTTACTGTGGAAGGGATGGTTTCAAGGTCAAGTGCCTGCCCTCTAACTTACCTTCCATTCAAATCGGCTCCCAAAACTTCACCTTGACGGGTATCAATCAAGATCGTTGGATTGTAAAAATGGTCCGAACAGACATTCCCAGCTACGATAATTGTTCTTTCCATTTCACCAACACTTCATTGGACCCCTCTCTGTTCTCCTTCGACACATCTGTCGTGAACATGACCCTGTTCTATGACTGTGATCCCGGGATTTCCATCGGCCAAAACAACATCACGTGCATGGATGATAGTAAAAAACAGGCTTTCTTCGTGATGAATCAAGATCATCAGTCAGGACGATTATTCACGGAGATTTCTCAGCACTGTGGAATTCAACTTGTGGTGCCGATTACAATGGGCGTCACTGTGGACCCTTTTGGTGGAATTGAATCGCTGAGGGCTGCTTTGGATATGGGATTTGATGTGCAGTATCTCGCAAACTGGAGTTACTGCTCACTATGCATGCAATCTGGAGGAATTTGTGGAAGCGTCCGTGACAATGGATCTCTATTTTCTTGTCATTGCCGAGACGGATCTTATGACTTTGTGTGTCCTAATCTTGCAAACATTTATCCACCATGTGTCATGGCAGGTTTTACAAGTGGAGCAACTGCAACACTTTTAATCTGCATTACTATCTTCCGTTGTAAAATCAGATCATTGAGGCAGAAGATAAGATTCTGGAAGACATCTAAGGTAGACCAACAAATGGAGGCCTTCATTAGAAATCAAGAGCCTTTGGCTCTCACAAGATATAGATTTGAAGATGTCAAGAAAATGACCAAATCTTTCCAAGTTAAATTGGGAGAAGGTGGTTATGGTACTGTATACAAAGGCAAGCTACTCAATGGCTGCCCTGTTGCTGTAAAGATGTTGAATCCATCCAAAGGAAATGGGGAAGAATTTGTCAATGAGGTCGCCAGCATCAGTAGAACTTCTCATGTTAATGTTGTTTCCCTCCTTGGATTTTGTTTGGAAGGCGAGAAAAAGGCTCTCGTATATGAATTTATGCACAATGGATCTCTTGACAAATTTATCCGCAACAAGGAAAATAAAACTAATTCATCCTTGACTTGGGAAAAATTGTACCAAATTGCAATTGGAACAGCTCGAGGACTTGAATACCTGCATAGGGGATGCAACACTCGAATCCTACACTTTGACATAAAGCCACATAATATCCTTTTGGATGAAAGCTTTTGTCCAAAGATCACAGATTTTGGACTTGCTAAATGTTGTCCCAAGAGAAGGAGCGTAATTTCACTTTCAGAAGCTAGAGGGACTCTTGGATATCTTGCACCAGAAGTTTGGAATAGAAATATAGGCGGAGTTTCTTATAAATCTGATGTTTATAGTTATGGAGTGATGCTAATAGACATGGTTGAAGTGCAGAAGAACATATCTATCGAACCCAATGACCCAACTGATGAGAATTATGTTCTCGATTCTATTTATGATAAACTCGAGCAAGGCGTAGATTTGGGTGGGGCGAGCACCAAAGATCAAGAAAATGGTATTGCAAAGAGAATGACCATCGTGGGTTTGTGGTGCATGCAAACATTTCCCACTCAAAGACCTACAATGAGTAGAGTGATCGAAATGTTAGAGGGAAGCCTAGACTCATTGCCAATGCCACCAAAGCCTGTAGAACTATGGGCTATGATTGATGGCCTAACTATGGCTTGGGAATATGGTTTTAGAAATATTGAGTTGGATGTTAACTATATGCTAGTTGTGACTCTGCTATCACAATATGCCACTTTGATGAAAGCCAACAGCCTGGGCAAATCTCCTGATTATTGTGGCCATCCCAAGTTCAAGCTGGATTGTCATGGATACAATGCTACAATCAACATCACGTCCCAGAACTTTCACGTAATCGATCTCAACCTCACCGCTAGGACTCTTCGGATAGCACGAATGGATTTGTGGGAAAATACGACTAGAGTGAACTCATCAACTTCTGTGAGATTTGATTTCCCAGTACATGGTGTTCCTCGTGAAGCATACTTTTGCGGGGTGAGAGTCGGAGCAGGACTGGCCTGGGATGTAGAACTAGTATTACCGTTCCTGTTCTGA 2298 0.4238 MLFSYTFRNLFFFCYLLLSSTTVPQYQSRREDDGYVNCHYTYNCGNFDIPYPFWGENRPGYCGRDGFKVKCLPSNLPSIQIGSQNFTLTGINQDRWIVKMVRTDIPSYDNCSFHFTNTSLDPSLFSFDTSVVNMTLFYDCDPGISIGQNNITCMDDSKKQAFFVMNQDHQSGRLFTEISQHCGIQLVVPITMGVTVDPFGGIESLRAALDMGFDVQYLANWSYCSLCMQSGGICGSVRDNGSLFSCHCRDGSYDFVCPNLANIYPPCVMAGFTSGATATLLICITIFRCKIRSLRQKIRFWKTSKVDQQMEAFIRNQEPLALTRYRFEDVKKMTKSFQVKLGEGGYGTVYKGKLLNGCPVAVKMLNPSKGNGEEFVNEVASISRTSHVNVVSLLGFCLEGEKKALVYEFMHNGSLDKFIRNKENKTNSSLTWEKLYQIAIGTARGLEYLHRGCNTRILHFDIKPHNILLDESFCPKITDFGLAKCCPKRRSVISLSEARGTLGYLAPEVWNRNIGGVSYKSDVYSYGVMLIDMVEVQKNISIEPNDPTDENYVLDSIYDKLEQGVDLGGASTKDQENGIAKRMTIVGLWCMQTFPTQRPTMSRVIEMLEGSLDSLPMPPKPVELWAMIDGLTMAWEYGFRNIELDVNYMLVVTLLSQYATLMKANSLGKSPDYCGHPKFKLDCHGYNATINITSQNFHVIDLNLTARTLRIARMDLWENTTRVNSSTSVRFDFPVHGVPREAYFCGVRVGAGLAWDVELVLPFLF 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1458g0001 765 FunFam serine/threonine-protein kinase PBS1-like 302 409 - -
Prci1458g0001 765 Gene3D Phosphorylase Kinase; domain 1 297 409 - -
Prci1458g0001 765 Pfam Wall-associated receptor kinase C-terminal 153 251 IPR032872 -
Prci1458g0001 765 SUPERFAMILY Protein kinase-like (PK-like) 318 609 IPR011009 -
Prci1458g0001 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Prci1458g0001 765 ProSiteProfiles Protein kinase domain profile. 335 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1458g0001 765 Gene3D Transferase(Phosphotransferase) domain 1 410 615 - -
Prci1458g0001 765 Pfam Wall-associated receptor kinase galacturonan-binding 38 101 IPR025287 GO:0030247
Prci1458g0001 765 Pfam Wall-associated receptor kinase galacturonan-binding 668 713 IPR025287 GO:0030247
Prci1458g0001 765 Pfam Protein kinase domain 339 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1458g0001 765 PANTHER RUST RESISTANCE KINASE LR10-RELATED 305 621 IPR045874 GO:0004672
Prci1458g0001 765 SMART serkin_6 335 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1458g0001 765 ProSitePatterns Protein kinases ATP-binding region signature. 341 363 IPR017441 GO:0005524
Prci1458g0001 765 FunFam PR5-like receptor kinase 410 619 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1458g0001 670 719 Receptor kinase-like Gene Family AT5G38260 40.385 5.51e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Prci1458g0001 Pkinase 7.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1458g0001 - - pcin:129300175 1589.32