Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1428g0001 ATGTCTCCATCGCTGCTTGTTGCCGAGGAGGAAGGACAGAGCAATATTTCAACAGTAGCATCTTCACCGTCCTCGGACTCTATCTCCCATAATGGAACTGCATTAAAAGAGCGCAATTACCTTGGATTGTCAGATTGTTCATCATCAGTTGACAGCTCTAGTGTCCCAACCATGTCAGATGAGAAAAAGGAGAACCTGAATTTGAAGGCTACAGAGTTGAGGTTGGGTCTTCCTGGATCCCAGTCTCCTGAAAGGGATTCAGATCTTTATGCACCAAACTCAACAAAGCTTGATGAGAAACCTCTGTTTCCTTTGCTTCCTACAAAAGATGGAATCTGTTCATCTTCCCCGAAAACTGTGGTTTCAGGAAACAAGAGAGGTTTCTCTGACACCATGGATGGGTTCCCAGAGGGGAATTTTACTGGTAATTCTGGGATAAATGTGATGTTACCTAGGTCTTCTGGGGCTCAGCCAACATTTATGAAAGAAACGCCTGCCAAAGTTTCACAGGAACGGCTTTCTGCAACCAATGGACTTGGTCATAATCATGCGGGGAACCTTGTTAATGGCAGCGTGCCAGCTGCTAAGTCACAAGTTGTTGGTTGGCCTCCTATAAGATCTTATAGGAAGAATTCATTGGCCAACACTTCAAAGAACAATGATGAAGTTGATGGAAAACCAGGGCCTGCTGCTCTCTTTGTGAAGGTGAGCATGGATGGTGCCCCTTATCTAAGGAAGGTAGATCTAAGGAATTATGCAACATATCAAGAGCTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCATGGCACTCCTGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGACCTTCTACATGGTTCTGAGTACGTTCTCACTTACGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTGACACATGCAAGAAGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCGCCCAGAGCTATGGAAAAATCCAAGAGCAGGAGCTAG 1056 0.4508 MSPSLLVAEEEGQSNISTVASSPSSDSISHNGTALKERNYLGLSDCSSSVDSSSVPTMSDEKKENLNLKATELRLGLPGSQSPERDSDLYAPNSTKLDEKPLFPLLPTKDGICSSSPKTVVSGNKRGFSDTMDGFPEGNFTGNSGINVMLPRSSGAQPTFMKETPAKVSQERLSATNGLGHNHAGNLVNGSVPAAKSQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYATYQELSSALEKMFSCFTLGQCGSHGTPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIDTCKKLKIMKGSDAIGLAPRAMEKSKSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1428g0001 351 ProSiteProfiles PB1 domain profile. 231 333 IPR000270 GO:0005515
Prci1428g0001 351 MobiDBLite consensus disorder prediction 1 95 - -
Prci1428g0001 351 Gene3D - 228 345 - -
Prci1428g0001 351 Pfam AUX/IAA family 71 342 IPR033389 -
Prci1428g0001 351 MobiDBLite consensus disorder prediction 7 34 - -
Prci1428g0001 351 MobiDBLite consensus disorder prediction 42 61 - -
Prci1428g0001 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Prci1428g0001 351 FunFam Auxin-responsive protein 226 343 - -
Prci1428g0001 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1428g0001 233 345 B3 DNA Binding Superfamily AT1G30330 27.434 1.28e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci1428g0001 AUX_IAA 2.7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1428g0001 K14484 - gmx:100789251 536.184