Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1420g0004 ATGTCTCTGAGCCCTCGTCGGCAAAGGACGAATGGCGAACCCGGGACAAACCTTTTCTACTGGTGCTACCAGTGCAACCGAATGGTCCGTCTCCCCTCCACGGACTTGTCCAACATAACCTGCCCGCTTTGTTCTGGCCAATTCCTCAGCGAGATCGACTTATCCAGGCCTAGACTCATATTGGATTTTACCCATCACGACCCATCACCGGAGGCCCGTCTTTTAGAAGCCCTTTCTTTGTCGTTTGACCCCCCAATTAGACGGTTTAATGGGCGGCTCCACGACCCCCGAGCTCAACCTCCACGCGTTCGTTGGATTCAGGATCGAGAGCAACCCCGCCAACAAGAGGGTAGACGTCATGCCGATTCCGATGGTGAAATTCCCGTCCGGCACGTAACACGTCGACGACATCGTCGGGCTGATCAGAGAGCTGGTGATTCCGACGCTGATGGACCCGAACCTCTAATTCTTCCTCATCCTCGGACTTGGCTAATTCTTCCACCTAGAGATCCGTCTGACCCATTGGAATTAATTCCGCGACTACAAAACCCTATACCGCGCGGTGTTGACCCGAGAGACTACTATTTTGGTCCTGGTCTGGGAGAACTGATTGACCAATTGACGGAAAATGACAGGCCAGGGGCACCGCCAGCGCCGGAGAGAACTATCCATGCGATTCCGAGTGTGAAAATCTCGGAGAGCCATCTGAAGGAGAACCCATACTGCCCGGTTTGCCAGGAAGAATTTGAAGTGGGTGGAGATGCAAGGGAATTGCCCTGCAAGCACATATACCATTCGGATTGCATTGTTCCTTGGCTAAGGCTTCACAATTCTTGCCCTGTTTGTCGGCTTGAGGTGCCGGTGTCCACCGACTCTGTTGAGCCCAGTGACGGAGGAGGCAGGATACGAAGGTGCCTGAGATGGTTTCAGATTCAACTGGCTTCTCTGTTGCCTTTTCACGGGAGGCGTCGACGGATTCGTCCAGAAGAAGAGAATGACATGATTGCTTCCGCAAGGGCTGCTAGTCCAGGGAGGATCCCATGCTGTATCCTTTAG 1056 0.535 MSLSPRRQRTNGEPGTNLFYWCYQCNRMVRLPSTDLSNITCPLCSGQFLSEIDLSRPRLILDFTHHDPSPEARLLEALSLSFDPPIRRFNGRLHDPRAQPPRVRWIQDREQPRQQEGRRHADSDGEIPVRHVTRRRHRRADQRAGDSDADGPEPLILPHPRTWLILPPRDPSDPLELIPRLQNPIPRGVDPRDYYFGPGLGELIDQLTENDRPGAPPAPERTIHAIPSVKISESHLKENPYCPVCQEEFEVGGDARELPCKHIYHSDCIVPWLRLHNSCPVCRLEVPVSTDSVEPSDGGGRIRRCLRWFQIQLASLLPFHGRRRRIRPEEENDMIASARAASPGRIPCCIL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1420g0004 351 ProSiteProfiles Zinc finger RING-type profile. 242 283 IPR001841 -
Prci1420g0004 351 MobiDBLite consensus disorder prediction 89 131 - -
Prci1420g0004 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 205 289 IPR013083 -
Prci1420g0004 351 SMART ring_2 242 282 IPR001841 -
Prci1420g0004 351 MobiDBLite consensus disorder prediction 89 155 - -
Prci1420g0004 351 FunFam E3 ubiquitin-protein ligase RING1-like 206 289 - -
Prci1420g0004 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 287 - -
Prci1420g0004 351 Pfam Ring finger domain 241 283 IPR001841 -
Prci1420g0004 351 SUPERFAMILY RING/U-box 222 290 - -
Prci1420g0004 351 Pfam zinc-ribbon 20 52 IPR039525 GO:0061630
Prci1420g0004 351 CDD RING-H2_RNF126-like 242 283 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1420g0004 214 300 C3H Transcription Factor Family AT1G68180 44.828 1.32e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1420g0004 K11982 - qsa:O6P43_015206 392.119