Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1408g0003 ATGGCGCTGATGAGCTCCAGTACTGTTGGTGGTTCTTGCTCCACCGTGGCGGCTCGATTGAACTATCACGTTTTCTTGAGCTTCAGAGGAGAAGACACTCGCAGAAACTTCACCGACCACCTGTACGCTGCGTTGCAGCGAAAAGGGATTGTCACTTTCAGGGACGACCAAGCGCTTGAGGGATCAGGACAGGTTATTTCGGAGAATCTCATGAAAGCTATTGAGGAATCTCTGTTTGCCATTGTCGTTCTGTCCCAAGACTATGCATTCTCGTCTTGGTGTTTGGATGAACTGCACAAGATTGTTGAATCCAAAGAAAACTTGACAGTTTTCCCGGTTTTTTATGGCGTAGATCCGTCTGATGTGCGACACCAAAAGGGAATTATTAGGAAAGCTTTTGAGAAACATGAAGGGAAATTTCCACTTTGTAAGGTGAGAAGATGGAGAAGAGCTTTAACACAAGTTGCAAACTTCGCTGGTTGGGATGCTAGAAACAAGCATGAAGCAGGAATCGTAAAAAATATTGCTGAAACAATATGGACCAAATTGCGTGTTAAATTGCCTTCAAATTTTGCTCATTTAGTTGGACTTCAATCAAAGGTAGACACAATGGTCTCTCTTTTGAAGATAGGGCTGAATCATAAATGTTTTGTAGGAATATGGGGTATGGGCGGAATAGGCAAAACGACTCTTTCTAGAGTTGTTTATGAAACAATCCGAGACAAATTTGAAATTAGTTGCTTTCTTGCCAATGTAAGGGAGGATTCAGAACGTAATGGTCTGGTTTACTTGCAAAAGAAGTTTCTCTCTGGTCTTCAATTAGAAAACATTAAAATCAGTGACTCCCATGATGGAGTTGAGGCAATAAGAAGCTTTTCACGTGATAAAAAAGTTCTTATTGTTCTTGATGATGTAAGTCATATAAGCCAACTACAGAATTTAGTTGGAGATAAAGATTGGTTTGGTGCTGGAAGCAGAATAATAGTAACTACGAGAGATATACACTTGTTGATAGCACATGATCAGTTTGAGAAGTATGAAATGAAGATGTTAGGAAGAGGTGAATCCCTCAATCTCTTGTGTAAGCATGCCTTCAAAATGGATTATCCTCAACAAGGTTATTGGGAATTGTCCAAAACGGTGGTTGATTATGCAGGTGGTCTTCCTTTAGCACTCCAAGTGTTAGGCTCGTTTCTTTGTAAAAGAAGTCAATCTGAATGGAGAGACACATTGGATAAGTTAAAGCAAAATTTACATAAAGATATTTTCAAGACACTTCGCATAAGTTATGATGGGCTAGATGATAAAGAGTTGAAAACAATATTCTTAGACATCGCATGCTTCTTTAATTGGGAGAAAAAAGTTGAAGTGATTAAAATATTTGAAAATTGTGGTCTTCATCCAACAATTGGAATCCAAGTTCTAATTGAAAAATCATTGTTGAGTACTTGCATTTCATTGGGTGGCCAAGAACATGTATACATGCATGATTTTCTTCAAGAGATGGGAAAAAACATTGTTTTGCAAGAATCTCTGAGTGATGCTGGCAGACGCAGTAGGTTGTGGTCTTGGGAGCAGATTGATCAAGTCTTTAGGGGGATACAGTAA 1608 0.3912 MALMSSSTVGGSCSTVAARLNYHVFLSFRGEDTRRNFTDHLYAALQRKGIVTFRDDQALEGSGQVISENLMKAIEESLFAIVVLSQDYAFSSWCLDELHKIVESKENLTVFPVFYGVDPSDVRHQKGIIRKAFEKHEGKFPLCKVRRWRRALTQVANFAGWDARNKHEAGIVKNIAETIWTKLRVKLPSNFAHLVGLQSKVDTMVSLLKIGLNHKCFVGIWGMGGIGKTTLSRVVYETIRDKFEISCFLANVREDSERNGLVYLQKKFLSGLQLENIKISDSHDGVEAIRSFSRDKKVLIVLDDVSHISQLQNLVGDKDWFGAGSRIIVTTRDIHLLIAHDQFEKYEMKMLGRGESLNLLCKHAFKMDYPQQGYWELSKTVVDYAGGLPLALQVLGSFLCKRSQSEWRDTLDKLKQNLHKDIFKTLRISYDGLDDKELKTIFLDIACFFNWEKKVEVIKIFENCGLHPTIGIQVLIEKSLLSTCISLGGQEHVYMHDFLQEMGKNIVLQESLSDAGRRSRLWSWEQIDQVFRGIQ 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1408g0003 535 Pfam TIR domain 21 193 IPR000157 GO:0007165
Prci1408g0003 535 Pfam NB-ARC domain 213 428 IPR002182 GO:0043531
Prci1408g0003 535 Gene3D - 185 345 IPR027417 -
Prci1408g0003 535 SMART till_3 21 158 IPR000157 GO:0007165
Prci1408g0003 535 SUPERFAMILY "Winged helix" DNA-binding domain 421 531 IPR036390 -
Prci1408g0003 535 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 161 IPR035897 -
Prci1408g0003 535 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 533 IPR044974 GO:0006952
Prci1408g0003 535 Gene3D - 351 434 IPR042197 -
Prci1408g0003 535 Gene3D - 19 184 IPR035897 -
Prci1408g0003 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 445 IPR027417 -
Prci1408g0003 535 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 185 - -
Prci1408g0003 535 FunFam Disease resistance protein (TIR-NBS-LRR class) 353 434 - -
Prci1408g0003 535 PRINTS Disease resistance protein signature 217 232 - -
Prci1408g0003 535 PRINTS Disease resistance protein signature 385 399 - -
Prci1408g0003 535 PRINTS Disease resistance protein signature 292 306 - -
Prci1408g0003 535 ProSiteProfiles TIR domain profile. 20 187 IPR000157 GO:0007165
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1408g0003 21 531 WRKY Transcription Factor Family AT4G12020 29.981 2.32e-54 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1408g0003 - - pcin:129300063 1073.92