Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2584 ATGGGAGTGGCTATAAAAGGCAGGGCGCGCCTTCCCCTTCCGGGCCTCCCATTGCTGCGAGTGCGAAGCAAAGCTCCAAGAGAGAATACAATGCGCTCCTGCTGCTCTCTCTCTCTCCAATTCTGGGCCCTCTCCTCTCTCCTCATTCCCCTGCTTCTGCCTTCAGCCACCGCCTTCCTTCTTCCGAGGTTCAACGCTTCTTCCCATGAGCATGCTGTTAATAATCCTGAGGACATAGCCTCTCTGCTTCATACGAGTATACGCAATCATACGGAAAGAAGAAATTTGGGTTTCTTCTCTTGTGGGACAGGGAACCCCATCGACGATTGCTGGCGGTGTGACCGGAACTGGCAGCGCCACCGGAAACATCTGGCCAATTGCGGAATTGGGTTTGGACGCAATGCCATCGGCGGCCGAGACGGGAAGTACTACGTCGTGACTGACCCGAGCGACGACGACCCCGTCAACCCAAAACCGGGCACCCTCCGCCACGCCGTCATCCAAGACGATCCCTTATGGATCGTGTTCAAAAGGGACATGGTTATCACTCTTAAGCAAGAGCTTATCATGAACAGCTTCAAGACCATCGACGGCCGTGGCTTCAACGTCCACATTGCTTACGGCGGATGCATCACCATCCAGTACATCACCAATGTCATCATCCACGGCCTGCATATCCATGACTGCAAGCAAACTGGCAACGCAATGGTTCGCAGCTCGCCTTCCCATTACGGATGGAGAACCTTGGCTGATGGCGATGGAATTTCCATCTTTGGTGCGAGCCACATCTGGATTGATCACAACTCGCTCTCTAATTGTGCAGACGGTCTTATTGATGCTGTCATGGGTTCGACTGCCATTACCATTTCCAACAATTACTTCACTCGCCACAACGAGGTGATGCTTTTGGGTCACAGTGACTCTTACGTAAGAGACAAGCAAATGCAAGTGACCATTGCCTACAACCATTTTGGGGAGGGCCTTATTCAGAGAATGCCAAGGTGCAGACATGGGTATTTCCACGTTGTAAACAATGACTACACCCACTGGGAAATGTATGCCATTGGTGGCAGTGCAGATCCCACCATTAATAGCCAGGGAAATCGATACCTTGCCCCTCAGAACGCTTTTGCTAAGGAGGTGACAAAGAGAGTTGACACAAATCCAACAGCATGGAAAAGGTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTAAACGGTGCCTTCTTCACTTCATCAGGTGCTGGATCTGGAGCTAGCTATGCCAGAGCTTCAAGTTTATCAGCCAAATCATCTTCTGTGGTTGGCACCATCACTGCTGGTGCAGGTGTTCTTAGCTGCCGGAGGGGTTCTATGTGTTAA 1362 0.514 MGVAIKGRARLPLPGLPLLRVRSKAPRENTMRSCCSLSLQFWALSSLLIPLLLPSATAFLLPRFNASSHEHAVNNPEDIASLLHTSIRNHTERRNLGFFSCGTGNPIDDCWRCDRNWQRHRKHLANCGIGFGRNAIGGRDGKYYVVTDPSDDDPVNPKPGTLRHAVIQDDPLWIVFKRDMVITLKQELIMNSFKTIDGRGFNVHIAYGGCITIQYITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCADGLIDAVMGSTAITISNNYFTRHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPQNAFAKEVTKRVDTNPTAWKRWNWRSEGDLLLNGAFFTSSGAGSGASYARASSLSAKSSSVVGTITAGAGVLSCRRGSMC 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2584 453 Pfam Pectate lyase 188 368 IPR002022 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 187 203 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 127 144 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 151 176 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 395 419 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 331 350 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 353 372 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 251 272 IPR018082 -
Prci13g2584 453 PRINTS Pollen allergen Amb family signature 424 447 IPR018082 -
Prci13g2584 453 SMART amb_all 179 376 IPR002022 -
Prci13g2584 453 Gene3D - 104 446 IPR012334 -
Prci13g2584 453 FunFam Pectate lyase 104 446 - -
Prci13g2584 453 SUPERFAMILY Pectin lyase-like 83 448 IPR011050 -
Prci13g2584 453 PANTHER PECTATE LYASE 18-RELATED 70 451 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2584 Prci-Chr13 39927180 39930915 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2584 69 453 Polysaccharide Lyase AT4G13710 78.974 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2584 K01728 - gmx:100809277 704.131