Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2545 ATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGACGCATTATTACGTGCTTATGTCAAACAGTATGGTCCAAGGGAATGGAATCTTGTGTCTCAGCGCATGAACACGCCCCTTAATAGGGATGCCAAATCCTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAGGGATCTCTCACTGAAGAAGAACAACGACTTGTCATCCGACTTCAGGCAAAACACGGCAACAAATGGAAGAAAATTGCTGCAGAAGTCCCGGGTCGCACTGCTAAGAGGTTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAACAGCAGAGGGAAAAAAAGGAGATCAATAAAGCAGTTGACCCAATTGACAACACTAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTGGTGAAAGAACGCCCTTCTCCATCCTACCTTATGGCTGCTTCCAATGGAGCTTTTATTCACACTGATGCACCAGCTCCTACGTCAGTTATGCTTCCTCCATGGCTTTCAAACTCAAATAACTCTACAACCATTCGGCCACCTTCCCCTTCTGTGACGCTAAGTCTCTCTAACTCAACTGTAGCTGCACCTCCTTTTCAATGGTTACAACCTGAGAGAGCGCCAGAGAATTCTTCTCTTGTTATAGGGAATGTAACACCTCACGGATCTAATCCAGCTTTTGGTGATAACATGCTAGTACCTGAGTTAATTGAGTGCTGTAAAGAGTTGGAAGAAGGGCACAGGGCATTGTCATCCCATAGGAAGGAAGCAGCGTGGAGGTTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCATGTCGGAGGCGGGAGAAGATGGAAGAGATTGAAGTGAAGATTAAAGCTCTCCGGGAAGAAGAGAAAGCGGCTTTGGATAGAATTGAGGCTGAATACCGGGAGCAGCTAGCTGGACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCTAAGCACTCGAAGCTGAGCAAGTTTCTTGAGCAGATGGGATGCAGAACCAGGCTTGCTGAGCCAAATGGAAGATGA 1071 0.4715 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKEINKAVDPIDNTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDAPAPTSVMLPPWLSNSNNSTTIRPPSPSVTLSLSNSTVAAPPFQWLQPERAPENSSLVIGNVTPHGSNPAFGDNMLVPELIECCKELEEGHRALSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEVKIKALREEEKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHSKLSKFLEQMGCRTRLAEPNGR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2545 356 Gene3D - 62 123 - -
Prci13g2545 356 Gene3D - 4 58 - -
Prci13g2545 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Prci13g2545 356 Coils Coil 283 325 - -
Prci13g2545 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Prci13g2545 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Prci13g2545 356 CDD SANT 6 53 IPR001005 -
Prci13g2545 356 Pfam Myb-like DNA-binding domain 7 68 - -
Prci13g2545 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Prci13g2545 356 SMART sant 3 55 IPR001005 -
Prci13g2545 356 SMART sant 58 106 IPR001005 -
Prci13g2545 356 FunFam MYB-related transcription factor 4 58 - -
Prci13g2545 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
Prci13g2545 356 CDD SANT 63 104 IPR001005 -
Prci13g2545 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2545 Prci-Chr13 39696561 39701375 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2545 1 347 MYB Transcription Factor Family AT2G37630 67.671 2.87e-167 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci13g2545 Myb_DNA-bind_6 2.3e-14 CL0123