Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2543 ATGGCTTCCATAATGCCCCTCCTCTGCATTCTCTCTCTTGCCTCGCTGCTTCTCCCAACCTCTGCTCGAATCCCCGGAGTTTACTCCGGCGGCCCCTGGCAGTCCGCTCACGCCACCTTCTACGGCGGCAGCGACGCTTCCGGAACTATGGGTGGTGCTTGTGGCTATGGAAATCTGTATAGCCAAGGGTACGGGGTGAACACGGCGGCTTTAAGCACGGCTCTGTTCAACAATGGGCTGAGCTGCGGCGCGTGCTTCGAGATCAAGTGCGACCAAGACCCTAAATGGTGCAACCCTGGAAGCCCCTCCATCATCGTCACTGCCACCAACTTCTGTCCTCCCAACTTCGCTCTTCCGAGCGACAATGGCGGATGGTGTAACCCCCCACGCCCCCACTTTGACCTCGCCATGCCCATGTTCCTCAAGATCGCTCAATACCGTGCCGGAATCGTCCCCGTTAACTACCGCCGGGTGGCATGCAGGAAGGTGGGGGGAACAAGGTTCACGATCAACGGATTCCGTTACTTCAACTTGGTTCTGATCACCAACGTGGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAGGGAAGCAAGACGAACTGGATGAGCATGAGCCGCAACTGGGGGCAAAATTGGCAATCCAACGCCGTGCTGGTGGGGCAGGCCCTCTCCTTTAGGATCACCGGCAGTGATAGACGCACCTCCACATCCTGGAACGTGGCGCCTCCTAATTGGCAGTTCGGCCAAACCTTCACCGGAAAGAATTTCCGCGTCTGA 780 0.5808 MASIMPLLCILSLASLLLPTSARIPGVYSGGPWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCDQDPKWCNPGSPSIIVTATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAQYRAGIVPVNYRRVACRKVGGTRFTINGFRYFNLVLITNVAGAGDIVRVSVKGSKTNWMSMSRNWGQNWQSNAVLVGQALSFRITGSDRRTSTSWNVAPPNWQFGQTFTGKNFRV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Prci13g2543 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Prci13g2543 259 PANTHER EXPANSIN-A15 26 257 IPR002963 GO:0009664
Prci13g2543 259 SMART dpbb_1 68 155 IPR007112 -
Prci13g2543 259 Gene3D - 167 257 IPR036749 -
Prci13g2543 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Prci13g2543 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Prci13g2543 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Prci13g2543 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Prci13g2543 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Prci13g2543 259 Gene3D - 20 161 IPR036908 -
Prci13g2543 259 FunFam Expansin 22 161 - -
Prci13g2543 259 Pfam Expansin C-terminal domain 167 243 IPR007117 -
Prci13g2543 259 CDD DPBB_EXPA_N 32 160 - -
Prci13g2543 259 FunFam Expansin 165 257 - -
Prci13g2543 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Prci13g2543 259 SUPERFAMILY PHL pollen allergen 164 254 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2543 Prci-Chr13 39659702 39662087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2543 5 259 Expansin Gene Family AT2G39700 81.961 1.53e-159 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2543 - - gmx:100820154 503.056