Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2539 ATGGTGTTGCAGAAGAATTTGAACTACAGTTTTAATGGCTATCAAGTGCCTGTCATTCCTAGAGCTTCAAGAACAACTAGGGGGAGGGGTACAGTCAGGAAGAAGAGTGAGGGCAATCAGATACAAGCTTTTGAAATTTTGGCTAGTGTAGCTGGCAACTTTCTGCAGGAGAATGAAAACTCCAATGCTGTGGCTGGGAAAGATCCTGTTGGTTTTGTTGGAATTAACATAAAGGATAAACAAGAGGAAGAAGCAGGGTCTTTTAAGAGTGACCTCTTTGAGCATGGATGTTGCGGTGAGAATGCCTCTGGTTTGGTCTCTAGTTTGCAAGGGAAGCACAACGACCAAAGGGTTGAAGGCTGTTCATCTTTTCTTGCCAATCGTCTTGAAGGTCAAGGACAAAATGTTTTTGAGAAGGAAGCAGATGGGCCAATAAAAGAGAATTGTGTGAATGAGAAAGTTGTTCATGTTACTGGCAGCTCTTCTGGAGTGATAGAACCTGATCACAGGGCTTCTAAATGGGAGAGTTCAGAAAATTCTGTAGAGAAGCCTTCATTGGAGGGCCTCGTACATGGTTCTAGTGGTAGGAAGTTATTTAATAGAGATAATGATGAAAACTTTGTTAGGTGTACTCAACCAAGCTCTAAGAATAAGAATTCTGGCTCCCTGCCAGATATGCCTTTTCAAAGGGTGAATAGTGTTTCTGGATCCAAAAGTCGTGATGTAGGCAAAAAATCAAAGAAAGGGAGTTTGTATGGAAGTGATGACAGTACTGGTAGAGATAATTATATGCTTCAAAGCTCACAGAGGATGTATCCTTTTAAGAAGAGGAAGTTCTTCAACCAGACCTCGCCATCTGCATCTGATAGGGGGTCTCATTGTCATGGCATATTTGATTCTTCTGACACCAGAGTTGATGATGCGAACTGCAGTGCAGCAATTGGAGCATCATCCTCTATAGCTGGTCCACAAGTACATGCTGGGTCGAGGGATTGTAATGTGAAGCTTAGCATAAAATCTTTTAAAGTTCCAGAGCTTTTTATTGATATACCTGAAACTGCAACTATTGGTTCATTAAAGAGGACAGTTATGGAGGCAGTGACAACTATTTTAGGAGATGAACTACATGTAGGTATTCTTCTTCAGGGAAAGAAGGTCCAAGATGACAGCAAAACTCTAATTCAGACTGGGATTTCGCAAGATGATAAACACCATAGATTGGGATTCATGTTGGAGCCAAGACATACTAAGATTTCACCTTCATATAACGAAGACCCTTATTTTCGAACCACTATTTCGCATCGGGATATATCCAGGAAACCTACATCTTTGATGCTACAACAAAGAACTTATAATGTCTCCCAAGAGCATTCCCTGATTAAATTTGAAAGTTGTGGTGGAGGTGACCTAAACGTGGTTCCCTCTCTAGCAGATACTTCCCCTAACAATACTGTGTCAAAGTGTCGTGCTCTGGTTGCAGTTCCAGCCATTAACATGGAAGCGTTAGCTGTCATTCCCTTCCGTCGTAAGCCTGGAAACCCTGACTTTGTGCAGCGTCGAATCAGGAGGCCTTTCTCTGTGTCTGAAGTAGAAGCACTGGTTCAGGCAGTTGAAAAACTTGGAACTGGAAGATGGCGTGATGTCAAACAGTGTGCTTTTGACAATGCGAAGCACAGGACTTATGTGGATTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTTTTGGACAGAGTCTTAGCTGCTCATGCTTATTGGTCTCAACAGCAATGTAAGCATCAAGTCAAGCCTCTTTGA 1845 0.4249 MVLQKNLNYSFNGYQVPVIPRASRTTRGRGTVRKKSEGNQIQAFEILASVAGNFLQENENSNAVAGKDPVGFVGINIKDKQEEEAGSFKSDLFEHGCCGENASGLVSSLQGKHNDQRVEGCSSFLANRLEGQGQNVFEKEADGPIKENCVNEKVVHVTGSSSGVIEPDHRASKWESSENSVEKPSLEGLVHGSSGRKLFNRDNDENFVRCTQPSSKNKNSGSLPDMPFQRVNSVSGSKSRDVGKKSKKGSLYGSDDSTGRDNYMLQSSQRMYPFKKRKFFNQTSPSASDRGSHCHGIFDSSDTRVDDANCSAAIGASSSIAGPQVHAGSRDCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTTILGDELHVGILLQGKKVQDDSKTLIQTGISQDDKHHRLGFMLEPRHTKISPSYNEDPYFRTTISHRDISRKPTSLMLQQRTYNVSQEHSLIKFESCGGGDLNVVPSLADTSPNNTVSKCRALVAVPAINMEALAVIPFRRKPGNPDFVQRRIRRPFSVSEVEALVQAVEKLGTGRWRDVKQCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQVKPL 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2539 614 MobiDBLite consensus disorder prediction 205 239 - -
Prci13g2539 614 SUPERFAMILY Homeodomain-like 523 604 IPR009057 -
Prci13g2539 614 MobiDBLite consensus disorder prediction 159 262 - -
Prci13g2539 614 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 518 576 IPR017930 -
Prci13g2539 614 SUPERFAMILY Ubiquitin-like 329 413 IPR029071 -
Prci13g2539 614 ProSiteProfiles Myb-like domain profile. 517 572 IPR001005 -
Prci13g2539 614 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 611 IPR031105 -
Prci13g2539 614 Gene3D - 513 613 - -
Prci13g2539 614 CDD SANT_TRF 523 573 - -
Prci13g2539 614 SMART sant 521 574 IPR001005 -
Prci13g2539 614 Pfam Myb-like DNA-binding domain 522 571 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2539 Prci-Chr13 39605863 39611111 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci13g2539 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2539 - - gmx:100807254 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2539 13 39605863 39611111 Prci2g1976 2 14909373 14914513 ECH
Prci13g2539 13 39605863 39611111 Prci13g2539 13 39605863 39611111 ECH