Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2512 ATGGATTTTAATCGTCAGAACACAAAGAAGTTACCTGAGCAGATAAGATGGAGCGCAGATGAAGCTGGAGCCAGATCTTATACGTGTGCCTTCTGCAAGAGGGGATTCTCAAATGCTCAAGCCCTAGGAGGTCACATGAACATCCATAGGAGAGACAGAGCAAAGCTGAAACAATCATCTGAAGAAAACTTGCTTTCTCTGGACATCTCAGTCAAGAACCCTAGTACTTGTACTTCTGATGATGACCAGCCTCCTCCTCATAATAAGCCTTCTAATTCGGAAGACAAGGGTTTGTTTCAGTGGGATTCTGAATCACTTCCCAGTAATCCCTTGCTTGCCGGCAATGATAATGAGAACATTGAAATAGATCTTGAGCTTCGGTTAGGTCATCAGCCGCATGACGCCTCAACTTTGAGCACCAGAGAATTTTTTTGA 435 0.4391 MDFNRQNTKKLPEQIRWSADEAGARSYTCAFCKRGFSNAQALGGHMNIHRRDRAKLKQSSEENLLSLDISVKNPSTCTSDDDQPPPHNKPSNSEDKGLFQWDSESLPSNPLLAGNDNENIEIDLELRLGHQPHDASTLSTREFF 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2512 144 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Prci13g2512 144 SUPERFAMILY beta-beta-alpha zinc fingers 23 53 IPR036236 -
Prci13g2512 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Prci13g2512 144 MobiDBLite consensus disorder prediction 93 114 - -
Prci13g2512 144 MobiDBLite consensus disorder prediction 60 86 - -
Prci13g2512 144 PANTHER OS07G0101800 PROTEIN 24 130 - -
Prci13g2512 144 MobiDBLite consensus disorder prediction 52 114 - -
Prci13g2512 144 Gene3D Classic Zinc Finger 5 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2512 Prci-Chr13 39427566 39428099 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2512 17 137 C2H2 Transcription Factor Family AT3G53820 39.706 1.02e-19 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g2512 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2512 - - mtr:25498560 135.576