Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2511 ATGGAAGAAGGTCAATGTTGGATTTGGACCAAAAGAAAGCACTCATCTTTGAGCTTTTATAATACTCACAACTTGACCTATGGCGATTCATGGGAAGAACAAGCCTTTGCGGAAGATGAGCGTTTTGGTGGATGCATATGGCCTCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCAGCCCAAGCTCTTGGTGGCCACATGAATGTTCACAGAAGAGATAGAGCTAGGCTAAAGCAACCCCCAAGTCCACACAAAACGGATGAAACCAGTCTTGATCATCAAAATTCTTTCACATCTTCCTTGGCTTATTCCAACACTAACCCTAATTCTGATGATCTTCGTATTCTTGCTTCTGAGGCTAAACTAGCCCCTCCATCTTTGATTCAAGAGAATTCCCCGCCATACGATTCTTGTATTTCCTGGTCAAACCTTGCAGCTGAACGAAGATTATATTCTCAAAAGACCGATCTTATTGGAACTAAGGATGATAAGATATCCAAGATAGTAGATACTGATTGTAATAAAGAAGAAGCTGATATTATGAGATGCAAGAGGAGAAGAATAACAGATGCTTCATCATTAATTCCATTGATCTCATCAAAATCAAGTTCAGTTGATAATAGGACTGGTCATATCAAGTCTCAGATGTTCGAGTTTATTAGTCCTAGTTCCAGTGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTACAGTCCTCCCAAGGGTTAA 738 0.4079 MEEGQCWIWTKRKHSSLSFYNTHNLTYGDSWEEQAFAEDERFGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPPSPHKTDETSLDHQNSFTSSLAYSNTNPNSDDLRILASEAKLAPPSLIQENSPPYDSCISWSNLAAERRLYSQKTDLIGTKDDKISKIVDTDCNKEEADIMRCKRRRITDASSLIPLISSKSSSVDNRTGHIKSQMFEFISPSSSEELDLELRLGYSPPKG 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2511 245 Gene3D Classic Zinc Finger 49 111 - -
Prci13g2511 245 SMART c2h2final6 52 74 IPR013087 -
Prci13g2511 245 MobiDBLite consensus disorder prediction 75 95 - -
Prci13g2511 245 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Prci13g2511 245 Pfam C2H2-type zinc finger 52 76 - -
Prci13g2511 245 MobiDBLite consensus disorder prediction 75 98 - -
Prci13g2511 245 SUPERFAMILY beta-beta-alpha zinc fingers 49 78 IPR036236 -
Prci13g2511 245 PANTHER OS07G0101800 PROTEIN 28 242 - -
Prci13g2511 245 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2511 Prci-Chr13 39420313 39422565 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2511 32 244 C2H2 Transcription Factor Family AT5G06070 37.104 4.05e-30 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci13g2511 zf-C2H2_6 9.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2511 - - pcin:129291690 494.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2511 13 39420313 39422565 Prci13g2511 13 39420313 39422565 ECH