Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci13g2484 ATGGAGGAGGGTTTTGAACCCTACCATGTTCCTCAGCAAAGCAGAAGAGACAAGCTCAGGGTCGGCTTTCACAGCCAACACTCTTCCCTTCCAACGGCGGCCTGCGCTGGTTTACTCCCTCTCTACGACCCTTCCCTTATTCCCTCCGATCTGCTGACTTGCGCCACAAATAATCCTCAATCCTCCAATTTGCAGATAGACCCCGCAACTGTGCAAATTATCAACACCAATCCTTTTCTTAATTTTCCTCTCGCTCAAACCCTTCGCGCCGAGCCATTGTCTCTATCTCTCTCCTCCTCCCACAATCACTACACTCAACAAGCTAATCTTAACAGTAATCCCCCCCTCGAGTTGAATCTTCAGAGACATGATGGCGGCTCCGTGAATATCCCGGCCAACGACACCGTTTTGAGAAGCTCCGTCGTTCCGTTGGGGCCGTTTACGGGTTATGCTTCGGTGTTGAAGGGATCGAGGTTTCTGAAGCCGGCTCAGCAGTTATTGGAGGAACTCTGTGACGTTGGGGGCCGTGAAATATGCGCCGCGGTAAAGATGACGGCTGACGCTTCGTTGATGGAACCTCCGTCGTCGGAGAGCCTCGGCTCCGGCGATCCGCCGCCGCCTCCTGGGGATGGTGTGGACGGTGGGAAGAAAAAGTCGAGACTGTTAACCATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGGTACAAGCAGTAGTAACTTCATTTGAGTATGTTTCAGGCCTGGGTAACGCAGCTCCTTATGCAACATTGGCTATAAACGCCATGACCAAGCATTTCAAATGCTTGAAGAATGTGATCATGGACCAGCTTCAACTCACAAATAATAAGGCTCATCATTTTCACAGTATGAGCAACAAGAAGGATGGCTCTCCAAGGTTTGGAAATGTTGACCATAATAGAGGAGCAGGACCTTACGGCCAAATTAGGGATTCTCACAACCCAGAATTGTTAGGGCAACAACCAATTTGGCGGCCTCAACGTGGACTTCCTGAACGTGCCGTCACTGTTCTTAGGGCATGGTTGTTTGAGCACTTTCTACATCCATATCCTACTGATACGGACAAGCTGATGCTGGCGAGACAGACTGGTCTGTCTCGTAGCCAGGTGTCAAACTGGTTCATTAATGCAAGAGTGAGGTTGTGGAAACCAATGGTCGAAGAAATACACATGCTGGAAACACTACAGTCTCAAAAGGATCATCAGAACTGTGAAGATCACAGCAAGAACAAGCCCAGCTTGAGTGACAAGTTTCAAGATGATGCTCCTTTTAAACGCAGCAGAAATTATGAACCTGGTCATGATATATCTGCAGTGACGAATCATCTTCCTTGTAATGCAATAGGCAATGTCAACAATAATAATCAGCCAGTCAGTGTTGGAGCCGCGGCCAATAGCGTCTCGCTCACGCTGGGTCTCCACCAGAACAACGGTGGGCTTGCTCTATCGGAACCTTTTCCCATGAGTGAAGCTCTCCGTTTCGGGCTCGCCCTAGAAGTACCCAGTAACGAAGAGTATGTAATGAATGGCTCTGATTCACAGAATCGGCATTATGGAAGAGACCAGGTTATTGGAGGGCAGCTTGTGCGTGACTTTGTTGGCTAA 1635 0.4899 MEEGFEPYHVPQQSRRDKLRVGFHSQHSSLPTAACAGLLPLYDPSLIPSDLLTCATNNPQSSNLQIDPATVQIINTNPFLNFPLAQTLRAEPLSLSLSSSHNHYTQQANLNSNPPLELNLQRHDGGSVNIPANDTVLRSSVVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGGREICAAVKMTADASLMEPPSSESLGSGDPPPPPGDGVDGGKKKSRLLTMLDEVYRRYRQYYQQVQAVVTSFEYVSGLGNAAPYATLAINAMTKHFKCLKNVIMDQLQLTNNKAHHFHSMSNKKDGSPRFGNVDHNRGAGPYGQIRDSHNPELLGQQPIWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETLQSQKDHQNCEDHSKNKPSLSDKFQDDAPFKRSRNYEPGHDISAVTNHLPCNAIGNVNNNNQPVSVGAAANSVSLTLGLHQNNGGLALSEPFPMSEALRFGLALEVPSNEEYVMNGSDSQNRHYGRDQVIGGQLVRDFVG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci13g2484 544 CDD homeodomain 334 395 IPR001356 GO:0003677
Prci13g2484 544 SMART HOX_1 334 398 IPR001356 GO:0003677
Prci13g2484 544 Pfam Homeobox KN domain 351 390 IPR008422 GO:0003677|GO:0006355
Prci13g2484 544 Pfam Associated with HOX 153 277 IPR006563 -
Prci13g2484 544 SMART prehox3 148 279 IPR006563 -
Prci13g2484 544 Gene3D - 337 399 - -
Prci13g2484 544 MobiDBLite consensus disorder prediction 408 436 - -
Prci13g2484 544 FunFam BEL1-like homeodomain protein 9 337 399 - -
Prci13g2484 544 ProSiteProfiles 'Homeobox' domain profile. 331 394 IPR001356 GO:0003677
Prci13g2484 544 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 415 - -
Prci13g2484 544 MobiDBLite consensus disorder prediction 191 217 - -
Prci13g2484 544 SUPERFAMILY Homeodomain-like 336 400 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci13g2484 Prci-Chr13 39181175 39186103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci13g2484 1 544 Homeobox Transcription Factor Family AT5G02030 42.881 4.34e-111 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Prci13g2484 POX 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci13g2484 - - qsa:O6P43_016709 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci13g2484 13 39181175 39186103 Prci13g2484 13 39181175 39186103 ECH